Transcript 17897 | MetamORF

Transcript

ID CARD

MetamORF ID

17897

ENSMUST00000152016

Name

Ift20-205

Strand

Biotype

retained_intron

Start-end positions

78536473-78541484

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:55978

Aliases

0610009H04Rik,
AU015496, ENSMUSG00000001105, Ift20,
MGI:1915585, mIFT20, NCBI:55978,
OFF:Ift20

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
21236	72	CTG ...	LCC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
21391	45	TTG ...	LHS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
419507	90	GTG ...	VAA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
933493	42	AGG ...	RTS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
21776	123	GTG ...	VLD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
20631	90	TTG ...	LLK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
21820	30	TTG ...	LPK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
20687	45	CTG ...	LQA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
18436	168	TTG ...	LGE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
17896	48	ATG ...	MLH ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell, Testis
21588	87	CTG ...	LKS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
18232	36	CTG ...	LIA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
21257	33	TTG ...	LAS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
18971	120	TTG ...	LDP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
19642	48	TTG ...	LSL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
18294	153	CTG ...	LHF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
18506	138	CTG ...	LNK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis

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