Transcript 17329 | MetamORF

Transcript

ID CARD

MetamORF ID

17329

ENSMUST00000163483

Name

Rab1a-206

Strand

Biotype

protein_coding

Start-end positions

20201602-20226856

CDS Start-stop positions

20201630-20224845

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:19324

Aliases

ENSMUSG00000020149,
Gtbp, MGI:97842, mKIAA3012,
NCBI:19324, OFF:Rab1a, Rab-1,
Rab1, Rab1a, Ypt1

Chr 11

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
295995	123	GTG ...	VPR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Downstream Overlapping sORF	Brain, NSC, v6-5
305586	42	CTG ...	LPP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
8964	33	GTG ...	VAA ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Testis, v6-5
91844	60	TTG ...	LQI ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, Testis, v6-5
312294	108	ATG ...	MLK ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Downstream Overlapping sORF	Glioma, Liver, MEF, MESC, NSC
21713	141	CTG ...	LEL ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Downstream Overlapping sORF	Brain, NSC, Testis, v6-5
9588	96	TTG ...	LES ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, Testis, v6-5
9198	111	TTG ...	LAI ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, Testis, v6-5
18633	165	CTG ...	LRL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Downstream Overlapping sORF	NSC, Testis, v6-5
8572	51	TTG ...	LAI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Testis
8641	30	TTG ...	LVW ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, MEF, Testis
294343	129	CTG ...	LVV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	NSC, v6-5
9175	102	CTG ...	LGL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, Testis, v6-5
293171	72	GTG ...	VEA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	Brain
8155	84	GTG ...	VGH ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, Testis, v6-5
18949	42	CTG ...	LGL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Testis
8882	63	ATG ...	MIR ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC, Testis
90887	48	TTG ...	LEF ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC, Testis, v6-5
17453	36	TTG ...	LES ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
312012	126	GTG ...	VVP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Downstream Overlapping sORF	Brain, NSC, v6-5

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