Transcript 17095 | MetamORF

Transcript

ID CARD

MetamORF ID

17095

ENSMUST00000193266

Name

Naa15-205

Strand

Biotype

protein_coding

Start-end positions

51415148-51476507

CDS Start-stop positions

51438350-51472800

CDS Relative positions

Sequences

Transcript sequence

TTG ...

Genome browsers

UCSC

Gene

NCBI:74838

Aliases

5730450D16Rik,
6330400I15, ASTBDN, ENSMUSG00000063273,
MGI:1922088, mNAT1, Naa15,
Narg1, NCBI:74838, OFF:Naa15,
Tbdn-1

Chr 3

ORFs

96 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
819857	33	TTG ...	LGP ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
543793	45	TTG ...	LGL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
52218	36	TTG ...	LIL ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, v6-5
52588	42	GTG ...	VKV ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
1218249	33	AGG ...	RCW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
536770	102	ATG ...	MER ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
505246	42	ATG ...	MLW ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, v6-5
1648869	42	TTG ...	LQS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
144861	75	TTG ...	LMD ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, NSC, v6-5
507143	63	CTG ...	LTF ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
136691	33	TTG ...	LVS ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, NSC, v6-5
541017	81	TTG ...	LEA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, NSC, v6-5
508656	48	GTG ...	VLA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
541773	93	ATG ...	MTK ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
1222755	144	AGG ...	RGK ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	sORF Upstream	E14
504256	66	ATG ...	MKP ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
1221491	39	ATT ...	ITL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
819538	33	TTG ...	LKK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
1221975	36	ATC ...	IHC ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
507279	54	GTG ...	VSG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil
504872	213	TTG ...	LAA ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Spleen_B_cell
506351	57	ATG ...	MKC ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
55534	48	CTG ...	LKK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, v6-5
140028	42	ATG ...	MIK ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
893357	48	ATC ...	IHF ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1224127	39	AGG ...	RLK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
816650	39	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
17094	45	ATG ...	MDW ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
1219681	30	ATA ...	ILQ ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
55472	144	ATG ...	MQK ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
505526	54	GTG ...	VVP ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
136857	36	TTG ...	LMD ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, v6-5
506549	249	GTG ...	VTR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
54156	102	ATG ...	MLG ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, v6-5
52752	99	CTG ...	LGI ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, v6-5
1223450	45	AAG ...	KKC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
52906	30	GTG ...	VHD ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
54264	39	TTG ...	LPL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, v6-5
17105	45	CTG ...	LQK ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Downstream Overlapping sORF	Brain, E14, MEF, NSC, Skin_tumor, v6-5
1221465	78	AAG ...	KPT ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
820548	48	GTG ...	VIN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
53561	81	CTG ...	LPG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, NSC, v6-5
53581	42	TTG ...	LLL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, NSC, v6-5
540262	36	TTG ...	LKL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
504614	84	CTG ...	LPK ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
506470	141	GTG ...	VNS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
1223465	51	AGG ...	RLK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1221361	66	ATT ...	IKT ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
508164	54	CTG ...	LRN ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, NSC, v6-5
544070	99	ATG ...	MMM ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
53773	30	GTG ...	VAA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, v6-5
506049	60	GTG ...	VYV ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
892917	42	AAG ...	KYT ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
413611	30	ATG ...	MNI ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, E14, MEF
504795	57	ATG ...	MRK ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC
507817	33	GTG ...	VHD ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
820121	30	CTG ...	LFG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
507513	48	TTG ...	LVK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, v6-5
506804	36	GTG ...	VCK ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
504885	66	CTG ...	LLT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
893837	51	ATA ...	IVL ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
752052	30	CTG ...	LKI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, NSC
1224365	159	AAG ...	KKR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1221980	87	AAG ...	KKL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
52290	48	GTG ...	VSS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, v6-5
1646688	48	CTG ...	LNI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
507774	45	GTG ...	VKH ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
1221995	42	TTG ...	LEQ ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
502783	150	ATG ...	MNI ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
142236	72	ATG ...	MDP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, NSC, v6-5
1223170	57	AGG ...	RPW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1224194	135	AAG ...	KKS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1173039	33	CTG ...	LPL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5
749900	105	ATG ...	MME ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
1171665	33	TTG ...	LRS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, v6-5
504904	240	GTG ...	VGK ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
751885	63	ATG ...	MYF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
894525	57	ACG ...	TEI ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
1222275	90	AAG ...	KKL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
128429	33	ATG ...	MDP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, v6-5
139073	45	CTG ...	LST ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
816906	36	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
893105	33	ATT ...	ILV ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
506708	165	CTG ...	LIK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
1218972	93	AGG ...	RNL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
506106	30	TTG ...	LHG ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
894760	45	ATC ...	IFL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
502908	39	GTG ...	VKH ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
504876	69	ATG ...	MLL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
503883	42	TTG ...	LVK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, v6-5
507073	39	GTG ...	VCS ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC
1223906	117	ATC ...	IRK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
51885	63	ATG ...	MKS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, NSC, v6-5
537983	33	ATG ...	MTS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
543298	96	ATG ...	MMT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
747525	45	TTG ...	LGL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5

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