Transcript 13340 | MetamORF

Transcript

ID CARD

MetamORF ID

13340

ENSMUST00000161769

Name

Hnrnpu-206

Strand

Biotype

nonsense_mediated_decay

Start-end positions

178323074-178337728

CDS Start-stop positions

178325281-178337571

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:51810

Aliases

AA408410,
AI256620, AL024194, AL024437,
AW557595, C86794, ENSMUSG00000039630,
hnRNP U, Hnrnpu, Hnrpu,
MGI:1858195, NCBI:51810, OFF:Hnrnpu,
SAFA, Sp120

Chr 1

ORFs

98 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1043988	195	GTG ...	VSA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, Neutrophil
975938	39	ATC ...	ISG ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF
103833	111	ATG ...	MES ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, NSC, R1E
962022	87	ATA ...	ILL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
26845	90	CTG ...	LEK ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil, NSC, R1E
1197750	186	AGG ...	RAS ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
28147	81	CTG ...	LAE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil, NSC
932434	93	ATA ...	IPT ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
36517	177	GTG ...	VVD ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, MEF, NSC, R1E
34972	105	ATG ...	MFS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, NSC
11057	93	GTG ...	VAR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil
942341	39	ATC ...	INL ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14
41075	126	CTG ...	LTG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC
954242	30	AGG ...	RAT ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14
50459	72	GTG ...	VVT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil, NSC
17894	123	GTG ...	VVE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, Neutrophil, NSC
1490174	171	TTG ...	LMF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	NSC
937523	168	AAG ...	KIL ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14
38411	195	TTG ...	LNS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC, R1E
35951	129	GTG ...	VEV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Neutrophil
413648	57	ATA ...	IIV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1197538	153	ACG ...	TRR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
15432	63	ATG ...	MQL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil, NSC
1308504	78	AAG ...	KSP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1520450	168	ATG ...	MFF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	NSC
963625	54	ATC ...	IVA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
7924	105	TTG ...	LAC ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, R1E
1300613	174	AGG ...	RGK ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1180795	192	ACG ...	TTR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
22332	126	CTG ...	LGS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, MEF, NSC, R1E
949078	135	AAG ...	KFL ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14
369210	153	CTG ...	LHF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Neutrophil
1183117	198	ACG ...	TAT ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
34781	159	GTG ...	VLP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, NSC
37416	51	GTG ...	VAT ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E
12689	81	TTG ...	LNL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC
8513	210	TTG ...	LKL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, NSC, R1E
40817	54	GTG ...	VGW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	NSC
25361	216	ATG ...	MLN ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
946274	201	AAG ...	KRK ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14
936418	168	AAG ...	KKK ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14
1274361	114	AAG ...	KWW ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
63137	66	GTG ...	VAI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
25372	174	GTG ...	VDI ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, BMDC, E14, MEF, R1E
10944	36	TTG ...	LIY ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil
1498908	81	TTG ...	LNT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	NSC, R1E
38967	246	CTG ...	LTP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Spleen_B_cell
1299028	204	ACG ...	TRT ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
958421	246	AAG ...	KNG ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14
23442	96	GTG ...	VLL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF
10129	48	CTG ...	LGN ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
37491	150	TTG ...	LAP ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, Neutrophil
1285715	108	ATC ...	IHT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1513230	183	TTG ...	LSG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	NSC
1485786	204	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	NSC
39151	90	CTG ...	LFF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Neutrophil, NSC
7665	174	ATG ...	MDK ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, MEF, NSC, R1E
118724	99	CTG ...	LKG ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E
17243	135	CTG ...	LQQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, Neutrophil
27511	135	GTG ...	VAV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
83794	204	CTG ...	LMK ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, R1E
19786	69	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
1706975	162	CTG ...	LFA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1294966	219	AGG ...	RQR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1286253	225	AAG ...	KRR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
26287	183	ATG ...	MRR ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, R1E
909204	36	AAG ...	KDI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
41311	96	GTG ...	VAL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, E14, NSC
18409	162	TTG ...	LVL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, NSC
27485	114	TTG ...	LAI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, NSC
25573	138	GTG ...	VVA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, E14
42080	213	TTG ...	LNF ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
40127	129	TTG ...	LLT ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC
946623	45	ATT ...	IIT ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14
39801	156	TTG ...	LPL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC
1297750	180	ATC ...	IVV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
957563	39	AAG ...	KPW ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14
9330	201	ATG ...	MKL ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, R1E
21465	45	GTG ...	VRQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC
32719	48	TTG ...	LKL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
21617	87	CTG ...	LLK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, NSC
91193	123	CTG ...	LAQ ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, BMDC, E14, MEF, Neutrophil, Spleen_B_cell
23803	87	GTG ...	VQL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC
1188146	165	ACG ...	TSS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
27674	54	GTG ...	VPV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
952522	165	ATA ...	IGE ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14
11087	57	CTG ...	LKT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
405196	117	TTG ...	LPG ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC
31805	186	CTG ...	LGI ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, BMDC, E14, MEF, R1E
1307281	81	AAG ...	KRG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
36300	120	GTG ...	VEL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Neutrophil, NSC
13034	42	CTG ...	LYF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	NSC
29062	36	GTG ...	VIC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil
90102	84	TTG ...	LKK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, E14, NSC
1200017	195	AAG ...	KPK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
965351	207	AAG ...	KEV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
13339	42	ATG ...	MKT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Skin_tumor
936402	93	ATA ...	ITV ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14

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