Transcript 117920

Transcript

ID CARD

MetamORF ID

117920

ENSMUST00000028880

Name

Slc20a1-201

Strand

Biotype

protein_coding

Start-end positions

129198764-129211616

CDS Start-stop positions

129199719-129210845

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:20515

Aliases

AI607883,
ENSMUSG00000027397, Glvr-1, Glvr1,
MGI:108392, NCBI:20515, OFF:Slc20a1,
Slc20a1

Chr 2

ORFs

73 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
811443	69	GTG ...	VAC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
1163836	78	ATG ...	MTI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1214173	135	CTG ...	LLH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1208415	87	TTG ...	LGK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1164764	54	TTG ...	LVS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1215030	69	AAG ...	KKS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1166188	54	CTG ...	LCP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1645718	204	CTG ...	LLR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	MEF, R1E
1166652	30	TTG ...	LFV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
1165033	63	GTG ...	VQP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
745955	156	GTG ...	VLC ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14, MEF, R1E
1163488	162	TTG ...	LFS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
110796	171	ATG ...	MGT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
112542	93	ATG ...	MQI ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
1164883	93	GTG ...	VGY ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1369477	33	CTG ...	LLW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC
738634	90	TTG ...	LPS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, MEF
728292	75	GTG ...	VRP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, v6-5
1366751	57	CTG ...	LWS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1365872	114	TTG ...	LKN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1217258	225	TTG ...	LRV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, R1E
104754	48	ATG ...	MMA ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF
1644876	186	CTG ...	LLH ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	MEF, R1E
121700	63	CTG ...	LHN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
1166641	39	CTG ...	LVL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1163448	111	CTG ...	LHG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
94945	60	ATG ...	MKK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
111105	30	TTG ...	LSI ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell, v6-5
740668	105	GTG ...	VLC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, MEF
1167791	189	GTG ...	VQC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
1207286	87	ATA ...	IPR ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
121808	141	TTG ...	LPS ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, E14, MEF, R1E
1163870	51	GTG ...	VQF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
102788	108	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
727894	93	GTG ...	VLP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF
110892	48	TTG ...	LRP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, MEF
736875	102	CTG ...	LCP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14, MEF
1162810	78	GTG ...	VVR ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
117919	144	GTG ...	VLP ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, E14, MEF, R1E
49420	81	ATG ...	MEF ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, E14, Liver, MEF, NSC, v6-5
811821	45	GTG ...	VPK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
1165172	60	CTG ...	LVL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1162139	78	ATG ...	MPA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, v6-5
1215364	75	TTG ...	LGK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
48266	66	GTG ...	VLL ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	sORF Upstream	3T3, E14, Liver, MEF, NSC, v6-5
1644224	201	CTG ...	LRR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	MEF
121876	126	GTG ...	VRP ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, MEF, R1E, v6-5
1168011	63	ATG ...	MDA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
106564	99	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1164598	48	CTG ...	LEF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
109970	54	CTG ...	LHN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
1167625	117	GTG ...	VAA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1163259	66	ATG ...	MCS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
744175	153	CTG ...	LCP ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14, MEF, R1E
1160995	42	TTG ...	LHL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1163476	39	GTG ...	VPL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
107525	39	CTG ...	LET ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell, v6-5
1207149	42	ATG ...	MPC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1166535	144	CTG ...	LSA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1168107	69	TTG ...	LSV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
114565	105	ATG ...	MAY ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, v6-5
743909	48	CTG ...	LFG ...	Ribo-seq	CTG		9	sORFs_org_Mouse	sORF Upstream	3T3, Brain, E14, MEF, R1E, v6-5
1164633	42	ATG ...	MWH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
105382	105	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
115536	45	ATG ...	MAA ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF
99096	120	GTG ...	VAT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1216180	93	TTG ...	LHG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
742320	57	CTG ...	LVS ...	Ribo-seq	CTG		9	sORFs_org_Mouse	sORF Upstream	3T3, Brain, E14, MEF, R1E, v6-5
99019	54	ATG ...	MNL ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, MEF
1166962	69	TTG ...	LYC ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1214238	105	TTG ...	LHG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
111443	96	TTG ...	LTN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1164529	84	CTG ...	LGP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5

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