Metam
ORF

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Gene

Gene

ID CARD

ID

NCBI:20515

Aliases

AI607883
ENSMUSG00000027397, Glvr-1, Glvr1
MGI:108392, NCBI:20515, OFF:Slc20a1
Slc20a1

Chromosome

2

Transcripts

114 ORFs
8 known transcripts
204 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

811443 69

GTG ...

VAC ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
1163836 78

ATG ...

MTI ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1214173 135

CTG ...

LLH ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
1208415 87

TTG ...

LGK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1164764 54

TTG ...

LVS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1215030 69

AAG ...

KKS ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1166188 54

CTG ...

LCP ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1645718 204

CTG ...

LLR ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF, R1E
1166652 30

TTG ...

LFV ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
1165033 63

GTG ...

VQP ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
745955 156

GTG ...

VLC ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC, E14,
MEF, R1E
1163488 162

TTG ...

LFS ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
110796 171

ATG ...

MGT ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
112542 93

ATG ...

MQI ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
1164883 93

GTG ...

VGY ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1369477 33

CTG ...

LLW ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC
738634 90

TTG ...

LPS ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC, MEF
728292 75

GTG ...

VRP ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, MEF, v6-5
1366751 57

CTG ...

LWS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1365872 114

TTG ...

LKN ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1217258 225

TTG ...

LRV ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, MEF, R1E
104754 48

ATG ...

MMA ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, MEF
1644876 186

CTG ...

LLH ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF, R1E
121700 63

CTG ...

LHN ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
1166641 39

CTG ...

LVL ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1163448 111

CTG ...

LHG ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
94945 60

ATG ...

MKK ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell, v6-5
111105 30

TTG ...

LSI ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell, v6-5
740668 105

GTG ...

VLC ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, E14, MEF
1167791 189

GTG ...

VQC ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
1207286 87

ATA ...

IPR ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
121808 141

TTG ...

LPS ...

Ribo-seq
TTG

9 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC, Brain,
E14, MEF, R1E
1163870 51

GTG ...

VQF ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
102788 108

CTG ...

LLL ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
727894 93

GTG ...

VLP ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, MEF
110892 48

TTG ...

LRP ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, E14, MEF
736875 102

CTG ...

LCP ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC, E14,
MEF
1162810 78

GTG ...

VVR ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
117919 144

GTG ...

VLP ...

Ribo-seq
GTG

9 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC, Brain,
E14, MEF, R1E
49420 81

ATG ...

MEF ...

Ribo-seq
ATG

strong

8 sORFs_org_Mouse
    sORF
    Upstream
3T3, BMDC, E14,
Liver, MEF, NSC,
v6-5
811821 45

GTG ...

VPK ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
1165172 60

CTG ...

LVL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1162139 78

ATG ...

MPA ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
1215364 75

TTG ...

LGK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
48266 66

GTG ...

VLL ...

Ribo-seq
GTG

weak

6 sORFs_org_Mouse
    sORF
    Upstream
3T3, E14, Liver,
MEF, NSC, v6-5
1644224 201

CTG ...

LRR ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
121876 126

GTG ...

VRP ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, Brain, E14,
MEF, R1E, v6-5
1168011 63

ATG ...

MDA ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
106564 99

CTG ...

LLP ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1164598 48

CTG ...

LEF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
109970 54

CTG ...

LHN ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
1167625 117

GTG ...

VAA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1163259 66

ATG ...

MCS ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
744175 153

CTG ...

LCP ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC, E14,
MEF, R1E
1160995 42

TTG ...

LHL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1163476 39

GTG ...

VPL ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
107525 39

CTG ...

LET ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell, v6-5
1207149 42

ATG ...

MPC ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
1166535 144

CTG ...

LSA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1168107 69

TTG ...

LSV ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
114565 105

ATG ...

MAY ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
743909 48

CTG ...

LFG ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    sORF
    Upstream
3T3, Brain, E14,
MEF, R1E, v6-5
1164633 42

ATG ...

MWH ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
105382 105

CTG ...

LLL ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
115536 45

ATG ...

MAA ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, MEF
99096 120

GTG ...

VAT ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1216180 93

TTG ...

LHG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
742320 57

CTG ...

LVS ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    sORF
    Upstream
3T3, Brain, E14,
MEF, R1E, v6-5
99019 54

ATG ...

MNL ...

Ribo-seq
ATG

weak

4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, E14, MEF
1166962 69

TTG ...

LYC ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1214238 105

TTG ...

LHG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
111443 96

TTG ...

LTN ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1164529 84

CTG ...

LGP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

728292 75

GTG ...

VRP ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
119179 264

CTG ...

LIK ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, R1E,
v6-5
119054 66

CTG ...

LHN ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
727894 93

GTG ...

VLP ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
49420 81

ATG ...

MEF ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1726435 153

CTG ...

LLR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1680562 102

ATG ...

MWS ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
99019 54

ATG ...

MNL ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1214173 135

CTG ...

LLH ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
122007 300

GTG ...

VAN ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, R1E,
v6-5
124200 228

CTG ...

LLS ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, R1E,
v6-5
1010000 105

GTG ...

VSE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
738634 90

TTG ...

LPS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1011104 117

CTG ...

LGA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1009404 171

CTG ...

LKQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1010949 72

GTG ...

VEL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
122197 147

CTG ...

LEF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
1011504 177

GTG ...

VTL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1162810 78

GTG ...

VVR ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
740668 105

GTG ...

VLC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
736875 102

CTG ...

LCP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1167625 117

GTG ...

VAA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1724856 150

CTG ...

LRR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
119759 87

ATG ...

MAY ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
1212489 174

TTG ...

LRV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1009547 66

CTG ...

LYN ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
110892 48

TTG ...

LRP ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
102380 267

CTG ...

LGF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1217317 255

ATT ...

IVM ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
122277 159

CTG ...

LVL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
106156 96

ATG ...

MRR ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1009943 132

GTG ...

VGS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1008528 120

TTG ...

LLG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
104754 48

ATG ...

MMA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
1009080 81

TTG ...

LID ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
106459 231

GTG ...

VGA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
111146 243

TTG ...

LAF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
122771 60

ATG ...

MPA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
48266 66

GTG ...

VLL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
94946 ENSMUST00000110315 Slc20a1-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

94945 60

ATG ...

MKK ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC
1164633 42

ATG ...

MWH ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1167791 189

GTG ...

VQC ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
114565 105

ATG ...

MAY ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, R1E
99096 120

GTG ...

VAT ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF
1163259 66

ATG ...

MCS ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
108566 99

CTG ...

LGH ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
99019 54

ATG ...

MNL ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain
811443 69

GTG ...

VAC ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
121700 63

CTG ...

LHN ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
1724586 33

GTG ...

VNK ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
110892 48

TTG ...

LRP ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain
1168011 63

ATG ...

MDA ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
107525 39

CTG ...

LET ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
1164883 93

GTG ...

VGY ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
48266 66

GTG ...

VLL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    sORF
    Upstream
Brain
112542 93

ATG ...

MQI ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC
106156 96

ATG ...

MRR ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    sORF
    Upstream
Brain, Glioma, Liver,
MEF, MESC
811821 45

GTG ...

VPK ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1163836 78

ATG ...

MTI ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
111105 30

TTG ...

LSI ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
102043 84

CTG ...

LWW ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
110796 171

ATG ...

MGT ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF
1207149 42

ATG ...

MPC ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1166641 39

CTG ...

LVL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1166535 144

CTG ...

LSA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1163488 162

TTG ...

LFS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
111443 96

TTG ...

LTN ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
49420 81

ATG ...

MEF ...

Ribo-seq
ATG

strong

4 sORFs_org_Mouse
Johnstone2016
    sORF
    Upstream
Brain, Glioma, Liver,
MEF, MESC, R1E
109970 54

CTG ...

LHN ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
115939 156

CTG ...

LRW ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1166188 54

CTG ...

LCP ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1162139 78

ATG ...

MPA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
95852 105

GTG ...

VPL ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
1725410 33

CTG ...

LTF ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
102381 ENSMUST00000144744 Slc20a1-207 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1214173 135

CTG ...

LLH ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
106156 96

ATG ...

MRR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1011504 177

GTG ...

VTL ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E
738634 90

TTG ...

LPS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
1168011 63

ATG ...

MDA ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
49420 81

ATG ...

MEF ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1870938 198

GTG ...

VWQ ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1010000 105

GTG ...

VSE ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E
1009404 171

CTG ...

LKQ ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E
1010949 72

GTG ...

VEL ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E
106564 99

CTG ...

LLP ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, R1E
48266 66

GTG ...

VLL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1010687 45

CTG ...

LLM ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E
111146 243

TTG ...

LAF ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    Intronic
    sORF
Brain
105382 105

CTG ...

LLL ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14
110892 48

TTG ...

LRP ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
E14, R1E
115536 45

ATG ...

MAA ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, E14,
R1E
1009943 132

GTG ...

VGS ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E
1009547 66

CTG ...

LYN ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, R1E
727894 93

GTG ...

VLP ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, E14
102380 267

CTG ...

LGF ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    Intronic
    sORF
Brain
1009080 81

TTG ...

LID ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, R1E
99019 54

ATG ...

MNL ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
E14, R1E
1212489 174

TTG ...

LRV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
736875 102

CTG ...

LCP ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, E14, R1E
1011104 117

CTG ...

LGA ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E
102788 108

CTG ...

LLL ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, R1E
104754 48

ATG ...

MMA ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, R1E
106459 231

GTG ...

VGA ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E
728292 75

GTG ...

VRP ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
1008528 120

TTG ...

LLG ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E
1873438 36

TTG ...

LSW ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
740668 105

GTG ...

VLC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
1680667 ENSMUST00000144025 Slc20a1-206 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

94945 60

ATG ...

MKK ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, R1E
1873215 48

GTG ...

VTW ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
107525 39

CTG ...

LET ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, R1E
48267 ENSMUST00000140907 Slc20a1-204 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1009547 66

CTG ...

LYN ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
727894 93

GTG ...

VLP ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
1547047 42

TTG ...

LWQ ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
1010949 72

GTG ...

VEL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
49420 81

ATG ...

MEF ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Testis
1009080 81

TTG ...

LID ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
1009943 132

GTG ...

VGS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
738634 90

TTG ...

LPS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
48266 66

GTG ...

VLL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
1164598 48

CTG ...

LEF ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
1010000 105

GTG ...

VSE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
740668 105

GTG ...

VLC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
1011104 117

CTG ...

LGA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
1008528 120

TTG ...

LLG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
736875 102

CTG ...

LCP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
3018319 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

112542 93

ATG ...

MQI ...

Predicted
ATG

1 Samandi2017
    sORF
808522 ENSMUST00000148988 Slc20a1-208 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

49420 81

ATG ...

MEF ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
    sORF
B_cell, Brain
48266 66

GTG ...

VLL ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    sORF
B_cell, Brain
15462 ENSMUST00000125714 Slc20a1-203 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1207933 30

AGG ...

RMK ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1210591 105

CTG ...

LWG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, R1E
15461 81

GTG ...

VGC ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
R1E, Skin_tumor
1871048 126

CTG ...

LGF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E

ORFs

114 ORFs
8 known transcripts
204 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

811443 69

GTG...

VAC...

GTG InCDS
Overlapping
sORF
B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1163836 78

ATG...

MTI...

ATG Alternative
InCDS
Overlapping
sORF
v6-5, Glioma, Liver,
MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 Johnstone2016
1214173 135

CTG...

LLH...

CTG Alternative
sORF
Upstream
Intronic
ncRNA
MEF, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1208415 87

TTG...

LGK...

TTG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
728292 75

GTG...

VRP...

GTG ncRNA
sORF
Alternative
Upstream
Intronic
MEF, 3T3, v6-5,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
2 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
94945 60

ATG...

MKK...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
Brain, Glioma, Liver,
MEF, MESC, R1E,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
Johnstone2016
1680667 ENSMUST00000144025 Slc20a1-206 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
119179 264

CTG...

LIK...

CTG ncRNA
sORF
Brain, E14, R1E,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
4 sORFs_org_Mouse
106156 96

ATG...

MRR...

ATG Intronic
sORF
Alternative
Upstream
ncRNA
R1E, Brain, Glioma,
Liver, MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
Johnstone2016
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1011504 177

GTG...

VTL...

GTG Intronic
sORF
ncRNA
Brain, R1E, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
738634 90

TTG...

LPS...

TTG Intronic
sORF
Alternative
Upstream
ncRNA
B_cell, 3T3, BMDC,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
2 sORFs_org_Mouse
48267 ENSMUST00000140907 Slc20a1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
1168011 63

ATG...

MDA...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
R1E, Glioma, Liver,
MEF, MESC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 Johnstone2016
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1164633 42

ATG...

MWH...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 Johnstone2016
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
119054 66

CTG...

LHN...

CTG ncRNA
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1164764 54

TTG...

LVS...

TTG Alternative
InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1215030 69

AAG...

KKS...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1166188 54

CTG...

LCP...

CTG Alternative
InCDS
Overlapping
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
49420 81

ATG...

MEF...

ATG Intronic
sORF
ncRNA
Upstream
E14, MEF, Brain,
Testis, 3T3, BMDC,
Liver, NSC, v6-5,
B_cell, Glioma, MESC,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
48267 ENSMUST00000140907 Slc20a1-204 retained_intron Ribo-seq
strong 2 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
strong 8 sORFs_org_Mouse
808522 ENSMUST00000148988 Slc20a1-208 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
strong 4 sORFs_org_Mouse
Johnstone2016
1645718 204

CTG...

LLR...

CTG Alternative
sORF
Upstream
MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1870938 198

GTG...

VWQ...

GTG Intronic
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1167791 189

GTG...

VQC...

GTG InCDS
Overlapping
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1009547 66

CTG...

LYN...

CTG Intronic
sORF
ncRNA
BMDC, Brain, E14,
R1E, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

48267 ENSMUST00000140907 Slc20a1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1166652 30

TTG...

LFV...

TTG Alternative
InCDS
Overlapping
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1010000 105

GTG...

VSE...

GTG Intronic
sORF
ncRNA
Brain, R1E, MEF,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
48267 ENSMUST00000140907 Slc20a1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
727894 93

GTG...

VLP...

GTG Intronic
sORF
ncRNA
Alternative
Upstream
BMDC, MEF, 3T3,
B_cell, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

48267 ENSMUST00000140907 Slc20a1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
2 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
1165033 63

GTG...

VQP...

GTG Alternative
InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
745955 156

GTG...

VLC...

GTG Alternative
sORF
Upstream
3T3, BMDC, E14,
MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
1163488 162

TTG...

LFS...

TTG InCDS
Overlapping
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
110796 171

ATG...

MGT...

ATG InCDS
Overlapping
sORF
MEF, v6-5, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
114565 105

ATG...

MAY...

ATG InCDS
Overlapping
sORF
Brain, R1E, E14,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
112542 93

ATG...

MQI...

ATG InCDS
Overlapping
sORF
E14, MEF,
Brain, Glioma, Liver,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
3018319 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
Johnstone2016
1726435 153

CTG...

LLR...

CTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1164883 93

GTG...

VGY...

GTG Alternative
InCDS
Overlapping
sORF
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1680562 102

ATG...

MWS...

ATG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
2 sORFs_org_Mouse
99096 120

GTG...

VAT...

GTG InCDS
Overlapping
sORF
Brain, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1163259 66

ATG...

MCS...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
Johnstone2016
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
108566 99

CTG...

LGH...

CTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1369477 33

CTG...

LLW...

CTG Alternative
InCDS
Overlapping
sORF
E14, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
99019 54

ATG...

MNL...

ATG Alternative
sORF
Upstream
ncRNA
Intronic
Brain, MEF, E14,
R1E, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
weak 2 sORFs_org_Mouse
102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
1366751 57

CTG...

LWS...

CTG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1009404 171

CTG...

LKQ...

CTG Intronic
sORF
ncRNA
Brain, R1E, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1365872 114

TTG...

LKN...

TTG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1217258 225

TTG...

LRV...

TTG Alternative
sORF
Upstream
E14, MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
104754 48

ATG...

MMA...

ATG Alternative
sORF
Upstream
Intronic
ncRNA
3T3, MEF, B_cell,
R1E, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
121700 63

CTG...

LHN...

CTG Alternative
InCDS
Overlapping
sORF
Brain, R1E, E14,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1010949 72

GTG...

VEL...

GTG Intronic
sORF
ncRNA
Brain, R1E, BMDC,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
strong 2 sORFs_org_Mouse
48267 ENSMUST00000140907 Slc20a1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1547047 42

TTG...

LWQ...

TTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

48267 ENSMUST00000140907 Slc20a1-204 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
1724586 33

GTG...

VNK...

GTG InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
122007 300

GTG...

VAN...

GTG ncRNA
sORF
Brain, E14, R1E,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
4 sORFs_org_Mouse
1644876 186

CTG...

LLH...

CTG Alternative
sORF
Upstream
MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
110892 48

TTG...

LRP...

TTG Alternative
sORF
Upstream
Intronic
ncRNA
Brain, E14, R1E,
3T3, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
moderate 2 sORFs_org_Mouse
1166641 39

CTG...

LVL...

CTG Alternative
InCDS
Overlapping
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
106564 99

CTG...

LLP...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
Brain, E14, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1163448 111

CTG...

LHG...

CTG Alternative
InCDS
Overlapping
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
111105 30

TTG...

LSI...

TTG Alternative
InCDS
Overlapping
sORF
BMDC, Spleen_B_cell, v6-5,
Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
740668 105

GTG...

VLC...

GTG Alternative
sORF
Upstream
ncRNA
Intronic
3T3, E14, MEF,
BMDC, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
48267 ENSMUST00000140907 Slc20a1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
48266 66

GTG...

VLL...

GTG Intronic
sORF
Upstream
ncRNA
R1E, Brain, 3T3,
E14, Liver, MEF,
NSC, v6-5, Testis,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
weak 6 sORFs_org_Mouse
48267 ENSMUST00000140907 Slc20a1-204 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
808522 ENSMUST00000148988 Slc20a1-208 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
1010687 45

CTG...

LLM...

CTG Intronic
sORF
Brain, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
1207286 87

ATA...

IPR...

ATA InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
124200 228

CTG...

LLS...

CTG ncRNA
sORF
Brain, E14, R1E,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
4 sORFs_org_Mouse
121808 141

TTG...

LPS...

TTG Alternative
sORF
Upstream
3T3, BMDC, Brain,
E14, MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
107525 39

CTG...

LET...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
Brain, MEF, Spleen_B_cell,
v6-5, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1680667 ENSMUST00000144025 Slc20a1-206 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
1163870 51

GTG...

VQF...

GTG InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
111146 243

TTG...

LAF...

TTG Intronic
sORF
ncRNA
Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
strong 2 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
105382 105

CTG...

LLL...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
Brain, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
1009080 81

TTG...

LID...

TTG Intronic
sORF
ncRNA
BMDC, Brain, E14,
R1E, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

48267 ENSMUST00000140907 Slc20a1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
115536 45

ATG...

MAA...

ATG Intronic
sORF
Alternative
Upstream
B_cell, Brain, E14,
R1E, 3T3, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
4 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
102788 108

CTG...

LLL...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
E14, v6-5, Brain,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
736875 102

CTG...

LCP...

CTG Alternative
sORF
Upstream
ncRNA
Intronic
3T3, BMDC, E14,
MEF, B_cell, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
2 sORFs_org_Mouse
102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
3 sORFs_org_Mouse
48267 ENSMUST00000140907 Slc20a1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
1011104 117

CTG...

LGA...

CTG ncRNA
sORF
Intronic
MEF, Brain, R1E,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
48267 ENSMUST00000140907 Slc20a1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
1162810 78

GTG...

VVR...

GTG Alternative
InCDS
Overlapping
sORF
ncRNA
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
117919 144

GTG...

VLP...

GTG Alternative
sORF
Upstream
3T3, BMDC, Brain,
E14, MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
1009943 132

GTG...

VGS...

GTG Intronic
sORF
ncRNA
Brain, R1E, BMDC,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
strong 2 sORFs_org_Mouse
48267 ENSMUST00000140907 Slc20a1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
811821 45

GTG...

VPK...

GTG InCDS
Overlapping
sORF
B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1165172 60

CTG...

LVL...

CTG Alternative
InCDS
Overlapping
sORF
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
1162139 78

ATG...

MPA...

ATG InCDS
Overlapping
sORF
E14, v6-5, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1215364 75

TTG...

LGK...

TTG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
122197 147

CTG...

LEF...

CTG ncRNA
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1207933 30

AGG...

RMK...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

15462 ENSMUST00000125714 Slc20a1-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
1644224 201

CTG...

LRR...

CTG Alternative
sORF
Upstream
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
1210591 105

CTG...

LWG...

CTG Intronic
sORF
E14, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

15462 ENSMUST00000125714 Slc20a1-203 retained_intron Ribo-seq
2 sORFs_org_Mouse
102380 267

CTG...

LGF...

CTG Intronic
sORF
ncRNA
Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
strong 2 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1164598 48

CTG...

LEF...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
Brain, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

48267 ENSMUST00000140907 Slc20a1-204 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
121876 126

GTG...

VRP...

GTG Alternative
sORF
Upstream
3T3, Brain, E14,
MEF, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
1212489 174

TTG...

LRV...

TTG Intronic
sORF
ncRNA
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
109970 54

CTG...

LHN...

CTG Alternative
InCDS
Overlapping
sORF
E14, v6-5, Brain,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1167625 117

GTG...

VAA...

GTG InCDS
Overlapping
sORF
ncRNA
v6-5, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
1724856 150

CTG...

LRR...

CTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
102043 84

CTG...

LWW...

CTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
119759 87

ATG...

MAY...

ATG ncRNA
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
744175 153

CTG...

LCP...

CTG Alternative
sORF
Upstream
3T3, BMDC, E14,
MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
1160995 42

TTG...

LHL...

TTG Alternative
InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1207149 42

ATG...

MPC...

ATG InCDS
Overlapping
sORF
MEF, BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1163476 39

GTG...

VPL...

GTG InCDS
Overlapping
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
1166535 144

CTG...

LSA...

CTG InCDS
Overlapping
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1168107 69

TTG...

LSV...

TTG Alternative
InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1873215 48

GTG...

VTW...

GTG Intronic
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1680667 ENSMUST00000144025 Slc20a1-206 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
106459 231

GTG...

VGA...

GTG Intronic
sORF
ncRNA
Brain, R1E, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1217317 255

ATT...

IVM...

ATT ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
122277 159

CTG...

LVL...

CTG ncRNA
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1008528 120

TTG...

LLG...

TTG Intronic
sORF
ncRNA
BMDC, Brain, R1E,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

48267 ENSMUST00000140907 Slc20a1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
743909 48

CTG...

LFG...

CTG sORF
Upstream
3T3, Brain, E14,
MEF, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
111443 96

TTG...

LTN...

TTG InCDS
Overlapping
sORF
Brain, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
15461 81

GTG...

VGC...

GTG Intronic
sORF
R1E, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

15462 ENSMUST00000125714 Slc20a1-203 retained_intron Ribo-seq
2 sORFs_org_Mouse
1871048 126

CTG...

LGF...

CTG Intronic
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

15462 ENSMUST00000125714 Slc20a1-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
1873438 36

TTG...

LSW...

TTG Intronic
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

102381 ENSMUST00000144744 Slc20a1-207 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
115939 156

CTG...

LRW...

CTG InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1216180 93

TTG...

LHG...

TTG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
742320 57

CTG...

LVS...

CTG sORF
Upstream
3T3, Brain, E14,
MEF, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
95852 105

GTG...

VPL...

GTG Alternative
InCDS
Overlapping
sORF
Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
1166962 69

TTG...

LYC...

TTG InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1214238 105

TTG...

LHG...

TTG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
122771 60

ATG...

MPA...

ATG ncRNA
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

104755 ENSMUST00000141285 Slc20a1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1725410 33

CTG...

LTF...

CTG InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94946 ENSMUST00000110315 Slc20a1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1164529 84

CTG...

LGP...

CTG Alternative
InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

117920 ENSMUST00000028880 Slc20a1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5