Transcript 446 | MetamORF

Transcript

ID CARD

MetamORF ID

446

ENST00000604509

Name

WDR11-208

Strand

Biotype

processed_transcript

Start-end positions

120879005-120909510

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

HGNC:13831

Aliases

BRWD2,
DR11, ENSG00000120008, FLJ10506,
HGNC:13831, HH14, KIAA1351,
NCBI:55717, OFF:WDR11, SRI1,
WDR11, WDR15

Chr 10

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1720002	48	TTG ...	LLF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	ncRNA sORF	Blood, HEK293
3110724	75	CTG ...	LDI ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	hES
100290	207	GTG ...	VEA ...	Ribo-seq	GTG		7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, MDA-MB-231
405577	144	TTG ...	LNP ...	Ribo-seq	TTG		8	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, hES, HFF, MDA-MB-231, RPE-1
98962	186	CTG ...	LHF ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	HEK293
1720022	30	GTG ...	VCR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	ncRNA sORF	Blood, HEK293
98954	99	CTG ...	LEL ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, hES, RPE-1
99524	288	CTG ...	LHS ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231
98952	126	TTG ...	LAV ...	Ribo-seq	TTG		8	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, MDA-MB-231, RPE-1
2541196	216	GTG ...	VYH ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES
281811	87	ATG ...	MII ...	Ribo-seq	ATG		3	sORFs_org_Human	ncRNA sORF	HEK293, LCL, MDA-MB-231
2092330	69	TTG ...	LQL ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
1720016	36	ATG ...	MTC ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	Blood, MDA-MB-231
2309182	144	ATG ...	MME ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
2304018	54	ATG ...	MLG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
2309180	141	ATG ...	MEL ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
98964	156	CTG ...	LHS ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	HEK293
448	42	CTG ...	LGC ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, hES, HFF, MDA-MB-231, RPE-1
3110722	87	CTG ...	LSN ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	hES
1720006	36	GTG ...	VKE ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231
1129607	219	CTG ...	LSN ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231
1720004	39	GTG ...	VVK ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231
631877	69	TTG ...	LFS ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	ncRNA sORF	THP-1
1129611	189	GTG ...	VLC ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231
1129609	207	CTG ...	LDI ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231
445	57	CTG ...	LVL ...	Ribo-seq	CTG		7	sORFs_org_Human	ncRNA sORF	HEK293, hES, MDA-MB-231

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