Transcript 98932 | MetamORF

Transcript

ID CARD

MetamORF ID

98932

ENST00000604220

Name

WDR11-207

Strand

Biotype

processed_transcript

Start-end positions

120868663-120883805

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

HGNC:13831

Aliases

BRWD2,
DR11, ENSG00000120008, FLJ10506,
HGNC:13831, HH14, KIAA1351,
NCBI:55717, OFF:WDR11, SRI1,
WDR11, WDR15

Chr 10

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
98931	165	CTG ...	LRE ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF
98936	141	CTG ...	LLT ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF
1134698	126	TTG ...	LTS ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES
98950	45	CTG ...	LLH ...	Ribo-seq	CTG		14	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
98942	117	CTG ...	LPA ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES, HFF
2304013	33	TTG ...	LLP ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
98934	156	GTG ...	VHL ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF
98948	66	GTG ...	VYH ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231
98944	78	TTG ...	LTT ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
98946	69	CTG ...	LVY ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF, MDA-MB-231
899662	66	AAC ...	NIK ...	Ribo-seq	AAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
2304008	48	CTG ...	LSW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
2304006	54	ATG ...	MVL ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
98938	138	CTG ...	LTG ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF
2304004	60	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
98940	129	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF
2540380	42	ATG ...	MNF ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	HEK293

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