Transcript 105310

Transcript

ID CARD

MetamORF ID

105310

ENST00000536981

Name

SLC3A2-208

Strand

Biotype

protein_coding

Start-end positions

62881725-62888845

CDS Start-stop positions

62885528-62888693

CDS Relative positions

Sequences

Transcript sequence

TGC ...

Genome browsers

UCSC

Gene

HGNC:11026

Aliases

4F2,
4F2HC, 4T2HC, CD98,
CD98HC, ENSG00000168003, HGNC:11026,
MDU1, NACAE, NCBI:6520,
OFF:SLC3A2, SLC3A2

Chr 11

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
916460	57	CAT ...	HSW ...	Ribo-seq	CAT		2	sORFs_org_Human	Alternative sORF Upstream	HEK293, Jurkat
286827	57	ATG ...	MLW ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative sORF Upstream	Brain_tumor, HEK293, HeLa, HFF
105312	72	CTG ...	LDS ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231
534145	102	ATG ...	MRL ...	Ribo-seq	ATG		9	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HAP1, HEK293, HeLa, HFF, MDA-MB-231, RPE-1, U2OS
102550	84	ATG ...	MGT ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
105305	54	ATG ...	MPL ...	Ribo-seq	ATG		1	Johnstone2016	Alternative sORF Upstream	Brain_tumor, HEK293, HeLa, HFF
105309	81	CTG ...	LPF ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
534139	66	ATG ...	MHP ...	Ribo-seq	ATG		19	sORFs_org_Human Johnstone2016	Alternative sORF Upstream	BJ, Blood, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, U2OS
534143	120	CTG ...	LFS ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
1010046	48	CTG ...	LSG ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, guo_2014, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1
1208664	96	TTG ...	LAW ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
1208666	87	ATG ...	MQL ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1

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