Transcript 4651 | MetamORF

Transcript

ID CARD

MetamORF ID

4651

ENST00000535768

Name

SLC3A2-207

Strand

Biotype

retained_intron

Start-end positions

62884455-62888169

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

HGNC:11026

Aliases

4F2,
4F2HC, 4T2HC, CD98,
CD98HC, ENSG00000168003, HGNC:11026,
MDU1, NACAE, NCBI:6520,
OFF:SLC3A2, SLC3A2

Chr 11

ORFs

4 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1008421	30	GTG ...	VAK ...	Ribo-seq	GTG	moderate	11	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, MDA-MB-231, MM1S, RPE-1
286829	33	CTG ...	LAW ...	Ribo-seq	CTG	strong	15	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
4650	69	TTG ...	LAE ...	Ribo-seq	TTG		25	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, Monocyte, RPE-1, U2OS
286827	57	ATG ...	MLW ...	Ribo-seq	ATG		15	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS

Export data