Transcript 95467 | MetamORF

Transcript

ID CARD

MetamORF ID

95467

ENST00000634508

Name

SEC24C-206

Strand

Biotype

protein_coding

Start-end positions

73760110-73763555

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

HGNC:10705

Aliases

ENSG00000176986,
HGNC:10705, KIAA0079, NCBI:9632,
OFF:SEC24C, SEC24C

Chr 10

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2298642	66	CTG ...	LPH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	sORF	MDA-MB-231, RPE-1
275455	45	CTG ...	LVH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	sORF	LCL, MDA-MB-231
95469	75	TTG ...	LAV ...	Ribo-seq	TTG		6	sORFs_org_Human	sORF	Blood, HEK293, LCL, MDA-MB-231, THP-1
896383	204	TTC ...	FRG ...	Ribo-seq	TTC		1	sORFs_org_Human	sORF	Jurkat
95466	105	ATG ...	MEA ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF	Blood, HEK293, MDA-MB-231, THP-1
896381	210	CCC ...	PSF ...	Ribo-seq	CCC		1	sORFs_org_Human	sORF	Jurkat
2298645	30	CTG ...	LDR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	MDA-MB-231
95471	63	CTG ...	LGL ...	Ribo-seq	CTG		7	sORFs_org_Human	sORF	Blood, HEK293, LCL, MDA-MB-231, THP-1, U2OS
896377	102	CCC ...	PKV ...	Ribo-seq	CCC		1	sORFs_org_Human	sORF	Jurkat
896379	93	ATC ...	ILG ...	Ribo-seq	ATC	moderate	1	sORFs_org_Human	sORF	Jurkat
1816470	45	ATG ...	MCL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	sORF	HeLa
896385	165	CCT ...	PAW ...	Ribo-seq	CCT		1	sORFs_org_Human	sORF	Jurkat
2298640	90	CTG ...	LGS ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	sORF	MDA-MB-231

Export data