Transcript 308631

Transcript

ID CARD

MetamORF ID

308631

ENST00000644289

Name

Strand

Biotype

protein_coding

Start-end positions

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

Genome browsers

Gene

HGNC:1919

Aliases

CHD4,
ENSG00000111642, HGNC:1919, Mi-2b,
Mi2-BETA, NCBI:1108, OFF:CHD4

Chr 12

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
308641	39	GTG ...	VNG ...	Ribo-seq	GTG		5	sORFs_org_Human	sORF	Blood, HEK293T, HeLa, LCL, MDA-MB-231
1833983	132	TTG ...	LMI ...	Ribo-seq	TTG		2	sORFs_org_Human	sORF	HeLa
308645	84	CTG ...	LMV ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	HEK293T, HeLa, LCL
2345585	75	TTG ...	LGK ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	MDA-MB-231
2345583	66	CTG ...	LYR ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
1833981	129	ATG ...	MIS ...	Ribo-seq	ATG		2	sORFs_org_Human	sORF	HeLa
308635	126	CTG ...	LGA ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	HEK293, HeLa, LCL
707962	69	ACC ...	TSS ...	Ribo-seq	ACC		1	sORFs_org_Human	sORF	Jurkat
1833979	114	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	HeLa
1213178	45	TTG ...	LVP ...	Ribo-seq	TTG		5	sORFs_org_Human	sORF	HAP1, HEK293, HEK293T, MDA-MB-231, RPE-1
308643	81	ATG ...	MVP ...	Ribo-seq	ATG		2	sORFs_org_Human	sORF	HeLa, LCL
2345579	54	CTG ...	LQW ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
2345587	87	ATG ...	MRW ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	MDA-MB-231
2345589	90	CTG ...	LMR ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
1097705	108	CTG ...	LRN ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	HEK293, HeLa, RPE-1
308633	174	CTG ...	LGW ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	LCL
1833992	162	GTG ...	VLS ...	Ribo-seq	GTG		1	sORFs_org_Human	sORF	HeLa
2345576	78	ATG ...	MTL ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	MDA-MB-231
2345591	105	CTG ...	LTP ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
2345574	72	CTG ...	LTG ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
308639	81	CTG ...	LGN ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	Blood, HEK293T, LCL
1300603	111	ATG ...	MPV ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	HEK293T
308637	33	GTG ...	VGI ...	Ribo-seq	GTG		4	sORFs_org_Human	sORF	Blood, HEK293T, LCL, MDA-MB-231
2345568	129	CTG ...	LRW ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
2345581	60	CTG ...	LWL ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
2345572	156	ATG ...	MGA ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	MDA-MB-231
308630	156	CTG ...	LDL ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	LCL
2345570	138	CTG ...	LNW ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
308649	132	ATG ...	MWN ...	Ribo-seq	ATG		2	sORFs_org_Human	sORF	HeLa, LCL
1833987	99	CTG ...	LLT ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293, HeLa
1833989	117	TTG ...	LES ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	HeLa
308647	90	CTG ...	LFL ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293T, LCL
1833985	96	CTG ...	LTQ ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293, HeLa

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