Transcript 3244 | MetamORF

Transcript

ID CARD

MetamORF ID

3244

ENST00000624693

Name

C11orf49-223

Strand

Biotype

TEC

Start-end positions

47160105-47162245

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

HGNC:28720

Aliases

C11orf49,
ENSG00000149179, FLJ22210, HGNC:28720,
MGC4707, NCBI:79096, OFF:C11orf49

Chr 11

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
101771	63	TTG ...	LPD ...	Ribo-seq	TTG	moderate	17	sORFs_org_Human	sORF	BJ, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
101779	117	CTG ...	LPS ...	Ribo-seq	CTG	weak	9	sORFs_org_Human	sORF	BJ, Brain, HEK293, HeLa, hES, MDA-MB-231
101777	156	CTG ...	LVN ...	Ribo-seq	CTG	strong	10	sORFs_org_Human	sORF	Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1820572	186	GTG ...	VNN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	sORF	HeLa
1820588	39	TTG ...	LSR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	sORF	HeLa
906585	267	ACT ...	TRS ...	Ribo-seq	ACT	weak	1	sORFs_org_Human	sORF	Jurkat
937260	45	CTG ...	LET ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	sORF	Blood, Brain, MDA-MB-231, RPE-1
1820578	111	CTG ...	LLS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	HeLa
1820576	45	ATG ...	MAC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	sORF	HeLa
3243	54	GTG ...	VDG ...	Ribo-seq	GTG	strong	19	sORFs_org_Human	sORF	BJ, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
1820584	36	GTG ...	VLR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	sORF	HeLa
906587	255	CCA ...	PVQ ...	Ribo-seq	CCA	moderate	1	sORFs_org_Human	sORF	Jurkat
906589	42	AGT ...	SDG ...	Ribo-seq	AGT	strong	1	sORFs_org_Human	sORF	Jurkat
1820574	120	GTG ...	VNG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	sORF	HeLa
2313558	84	TTG ...	LPA ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	sORF	MDA-MB-231
1820586	33	CTG ...	LRP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	HeLa
1820580	102	CTG ...	LAL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	HeLa
101773	45	CTG ...	LMH ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	sORF	BJ, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
101775	174	CTG ...	LAQ ...	Ribo-seq	CTG	strong	8	sORFs_org_Human	sORF	Brain, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1820582	63	CTG ...	LTD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	HeLa

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