Transcript 439 | MetamORF

Transcript

ID CARD

MetamORF ID

439

ENST00000603658

Name

WDR11-206

Strand

Biotype

retained_intron

Start-end positions

120904065-120905656

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

HGNC:13831

Aliases

BRWD2,
DR11, ENSG00000120008, FLJ10506,
HGNC:13831, HH14, KIAA1351,
NCBI:55717, OFF:WDR11, SRI1,
WDR11, WDR15

Chr 10

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1314199	183	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Human	Intronic sORF	HEK293, hES
1314201	180	CTG ...	LLE ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HEK293, hES
98968	81	GTG ...	VKR ...	Ribo-seq	GTG		7	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, MDA-MB-231
98970	189	GTG ...	VQL ...	Ribo-seq	GTG		4	sORFs_org_Human	Intronic sORF	HEK293, hES
443	69	CTG ...	LQT ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Intronic sORF	HEK293, HeLa
2304051	57	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Intronic sORF	MDA-MB-231
441	102	CTG ...	LID ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Intronic sORF	HEK293, HeLa, HFF
1720018	60	CTG ...	LCS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Intronic sORF	Blood, HEK293, MDA-MB-231
1314203	177	TTG ...	LET ...	Ribo-seq	TTG		2	sORFs_org_Human	Intronic sORF	HEK293, hES
98966	90	CTG ...	LQE ...	Ribo-seq	CTG		6	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES
278832	51	CTG ...	LFS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293, LCL
438	111	TTG ...	LLC ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, HFF, MDA-MB-231
1720020	36	GTG ...	VQI ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Intronic sORF	Blood, HEK293, MDA-MB-231

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