Transcript 9898 | MetamORF

Transcript

ID CARD

MetamORF ID

9898

ENST00000545083

Name

CHD4-212

Strand

Biotype

retained_intron

Start-end positions

6591762-6592736

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTG ...

Genome browsers

UCSC

Gene

HGNC:1919

Aliases

CHD4,
ENSG00000111642, HGNC:1919, Mi-2b,
Mi2-BETA, NCBI:1108, OFF:CHD4

Chr 12

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
918888	141	GCC ...	AKE ...	Ribo-seq	GCC		1	sORFs_org_Human	Intronic sORF	Jurkat
9904	105	CTG ...	LGP ...	Ribo-seq	CTG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
9910	174	TTG ...	LEG ...	Ribo-seq	TTG		22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
296882	30	TTG ...	LLT ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Intronic sORF	HAP1, HEK293, LCL, MDA-MB-231, U2OS
296877	36	ATG ...	MCS ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Intronic sORF	HeLa, hES, LCL, MDA-MB-231
296873	105	CTG ...	LSF ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	Blood, LCL, THP-1
9897	33	GTG ...	VRV ...	Ribo-seq	GTG		22	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
639518	36	ATG ...	MPE ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Intronic sORF	BJ, Blood, MDA-MB-231, THP-1
410219	159	GAG ...	EEF ...	Ribo-seq	GAG		1	sORFs_org_Human	Intronic sORF	HCT116
9900	69	GTG ...	VFK ...	Ribo-seq	GTG		24	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
9908	162	TTG ...	LEE ...	Ribo-seq	TTG		23	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
639529	36	CTG ...	LLN ...	Ribo-seq	CTG		5	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, THP-1
639531	45	TTG ...	LFH ...	Ribo-seq	TTG		7	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, RPE-1, THP-1
296871	48	TTG ...	LKH ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	Intronic sORF	BJ, Blood, hES, LCL, MDA-MB-231, THP-1
9902	90	TTG ...	LRR ...	Ribo-seq	TTG		23	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
918882	66	TGG ...	WQC ...	Ribo-seq	TGG		1	sORFs_org_Human	Intronic sORF	Jurkat
1733938	78	ATG ...	MTC ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Intronic sORF	Blood, MDA-MB-231
296886	39	CTG ...	LKQ ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	guo_2014, LCL
9906	117	CTG ...	LHD ...	Ribo-seq	CTG		22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS

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