Transcript 4085 | MetamORF

Transcript

ID CARD

MetamORF ID

4085

ENST00000543627

Name

DDB1-222

Strand

Biotype

protein_coding

Start-end positions

61329957-61333775

CDS Start-stop positions

-61332968

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

HGNC:2717

Aliases

DDB1,
ENSG00000167986, HGNC:2717, NCBI:1642,
OFF:DDB1

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
8375	117	ATG ...	MWS ...	Ribo-seq	ATG		17	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
907844	126	CGC ...	RRG ...	Ribo-seq	CGC		1	sORFs_org_Human	sORF	Jurkat
407635	93	CAT ...	HVW ...	Ribo-seq	CAT		1	sORFs_org_Human	sORF	HCT116
407633	87	TGG ...	WED ...	Ribo-seq	TGG		1	sORFs_org_Human	sORF	HCT116
907853	54	CTA ...	LRG ...	Ribo-seq	CTA		2	sORFs_org_Human	sORF	BJ, Jurkat
8373	69	ATG ...	MGR ...	Ribo-seq	ATG		21	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
407641	159	CAA ...	QKH ...	Ribo-seq	CAA		2	sORFs_org_Human	sORF	HCT116, Jurkat
907838	33	AGC ...	SEV ...	Ribo-seq	AGC	strong	1	sORFs_org_Human	sORF	Jurkat
407637	132	GGT ...	GHR ...	Ribo-seq	GGT		1	sORFs_org_Human	sORF	HCT116
907847	177	CTT ...	LKP ...	Ribo-seq	CTT		2	sORFs_org_Human	sORF	HEK293, Jurkat
4087	42	ATG ...	MGR ...	Ribo-seq	ATG		27	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
8371	60	TTG ...	LRS ...	Ribo-seq	TTG		21	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
907842	75	AGG ...	RGF ...	Ribo-seq	AGG		1	sORFs_org_Human	sORF	Jurkat
286029	63	GTG ...	VSR ...	Ribo-seq	GTG		23	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
907849	198	ACA ...	TLY ...	Ribo-seq	ACA		1	sORFs_org_Human	sORF	Jurkat
4084	33	TTG ...	LRS ...	Ribo-seq	TTG		27	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4089	90	ATG ...	MWS ...	Ribo-seq	ATG		24	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

Export data