Transcript 305 | MetamORF

Transcript

ID CARD

MetamORF ID

305

ENST00000541549

Name

EIF3A-203

Strand

Biotype

protein_coding

Start-end positions

119035793-119080823

CDS Start-stop positions

119036039-119080676

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

HGNC:3271

Aliases

EIF3,
eIF3-p170, eIF3-theta, eIF3a,
EIF3A, EIF3S10, ENSG00000107581,
HGNC:3271, KIAA0139, NCBI:8661,
OFF:EIF3A, TIF32

Chr 10

ORFs

150 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
481131	186	CTG ...	LVP ...	Ribo-seq	CTG		8	sORFs_org_Human	Overlapping sORF Upstream	BJ, HEK293, HEK293T, HeLa, MM1S, RPE-1
1501221	33	TTG ...	LLD ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231
1720467	60	TTG ...	LAL ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
480895	87	ATG ...	MMI ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HEK293, HEK293T, hES, MDA-MB-231
278631	141	GTG ...	VNG ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, U2OS
480908	30	ATG ...	MYY ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, MDA-MB-231
899346	36	GAG ...	EAG ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
480897	126	GTG ...	VVQ ...	Ribo-seq	GTG	strong	4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HEK293T, HeLa, MDA-MB-231
279804	249	GTG ...	VNG ...	Ribo-seq	GTG		7	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, hES, LCL, loayza_puch_2016, MDA-MB-231, U2OS
480926	141	CTG ...	LVP ...	Ribo-seq	CTG		19	sORFs_org_Human	Overlapping sORF Upstream	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1719868	30	CTG ...	LNS ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, MDA-MB-231
2303628	36	GTG ...	VMT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1501852	300	GTG ...	VRK ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, MDA-MB-231, RPE-1
480901	147	ATG ...	MMT ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293T, MDA-MB-231, RPE-1
524868	66	GTG ...	VKR ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, U2OS
3199722	60	TCA ...	SKL ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
405413	81	AGA ...	RAT ...	Ribo-seq	AGA	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
631768	63	CTG ...	LEM ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231, THP-1
2303665	33	TTG ...	LKN ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
899355	105	CTA ...	LES ...	Ribo-seq	CTA		1	sORFs_org_Human	Overlapping sORF Upstream	Jurkat
481127	123	CTG ...	LSL ...	Ribo-seq	CTG		10	sORFs_org_Human	Overlapping sORF Upstream	HEK293, HEK293T, HeLa, Jurkat, MM1S, RPE-1
304	30	TTG ...	LAI ...	Ribo-seq	TTG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
899334	36	GAT ...	DLM ...	Ribo-seq	GAT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2486085	75	ATG ...	MRL ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
524855	93	CTG ...	LRN ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	InCDS Overlapping sORF	BJ, hES, MDA-MB-231, U2OS
3304201	4149	ATG ...	MPA ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
1501216	30	TTG ...	LML ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1
1501195	114	GTG ...	VAG ...	Ribo-seq	GTG	strong	3	sORFs_org_Human	InCDS Overlapping sORF	BJ, hES, MDA-MB-231
899338	36	CCT ...	PFS ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
480880	120	ATG ...	MKV ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293T, hES, MDA-MB-231
899350	54	GAT ...	DAG ...	Ribo-seq	GAT		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, Jurkat
1314080	90	CTG ...	LLA ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, loayza_puch_2016, MM1S, RPE-1
405428	66	ATT ...	IML ...	Ribo-seq	ATT	weak	1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
900639	84	CGG ...	RKM ...	Ribo-seq	CGG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
3199595	93	CTC ...	LVG ...	Ribo-seq	CTC		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
524852	39	ATG ...	MTV ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	hES, MDA-MB-231, U2OS
405438	99	AGT ...	SSL ...	Ribo-seq	AGT		1	sORFs_org_Human	Overlapping sORF Upstream	HCT116
405848	228	AAA ...	KGT ...	Ribo-seq	AAA		1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
98794	93	CTG ...	LTP ...	Ribo-seq	CTG		26	sORFs_org_Human	Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
899325	48	GGA ...	GRN ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
480910	33	CTG ...	LLK ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293T, HeLa, MDA-MB-231, RPE-1
2305827	270	CTG ...	LNS ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, RPE-1
524865	48	CTG ...	LKQ ...	Ribo-seq	CTG		8	sORFs_org_Human	InCDS Overlapping sORF	BJ, HAP1, HEK293, HEK293T, hES, U2OS
278645	228	GTG ...	VRK ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, hES, LCL, MDA-MB-231, RPE-1, U2OS
481123	78	ATG ...	MPS ...	Ribo-seq	ATG		11	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, HFF, MM1S
405422	174	CTG ...	LRK ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HCT116, HEK293, MDA-MB-231, RPE-1
900641	96	ATT ...	IFR ...	Ribo-seq	ATT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
278652	42	GTG ...	VVK ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
98788	45	TTG ...	LTI ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
2486065	66	ATG ...	MKM ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
2305839	99	GTG ...	VLS ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
3199597	33	TCA ...	SKL ...	Ribo-seq	TCA		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
279802	195	ATG ...	MTR ...	Ribo-seq	ATG		8	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, U2OS
480912	39	CTG ...	LKL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293T, HeLa, MDA-MB-231, RPE-1
278633	216	GTG ...	VDG ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
632313	114	CTG ...	LKR ...	Ribo-seq	CTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231, THP-1
1501218	33	TTG ...	LLM ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1
405432	33	AGG ...	RLN ...	Ribo-seq	AGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
480885	57	ATG ...	MIG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293T, MDA-MB-231
405426	201	AAG ...	KLN ...	Ribo-seq	AAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
278637	177	ATG ...	MMI ...	Ribo-seq	ATG	weak	11	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
278623	48	ATG ...	MWI ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T, LCL
1719863	36	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
2486077	69	CTG ...	LMK ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
480893	84	ATG ...	MIA ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, hES, MDA-MB-231
1719852	111	ATG ...	MNK ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
279800	183	CTG ...	LRE ...	Ribo-seq	CTG		8	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HEK293T, hES, LCL, loayza_puch_2016, MDA-MB-231, U2OS
900643	114	CCG ...	PPR ...	Ribo-seq	CCG		1	sORFs_org_Human	Overlapping sORF Upstream	Jurkat
1720469	36	ATG ...	MRC ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
481129	138	CTG ...	LTP ...	Ribo-seq	CTG		11	sORFs_org_Human	Overlapping sORF Upstream	HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, MM1S, RPE-1
631766	57	ATG ...	MLF ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, THP-1
405407	81	AGG ...	RTL ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1501212	48	ATG ...	MLR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231
405424	195	AAC ...	NSR ...	Ribo-seq	AAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1720458	120	GTG ...	VPK ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, RPE-1
278635	174	ATG ...	MIE ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HEK293T, LCL, MDA-MB-231, RPE-1
98790	36	GTG ...	VGV ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231, RPE-1
405415	87	CGA ...	RGR ...	Ribo-seq	CGA	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
480883	42	CTG ...	LGS ...	Ribo-seq	CTG	strong	11	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
631772	78	CTG ...	LCF ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231, THP-1
2303669	45	ATG ...	MHL ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	hES, MDA-MB-231
1314078	87	CTG ...	LAR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative sORF Upstream	HEK293, MM1S, RPE-1
480928	183	CTG ...	LGA ...	Ribo-seq	CTG		17	sORFs_org_Human	Overlapping sORF Upstream	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
480889	63	CTG ...	LMM ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HEK293T, MDA-MB-231
279798	156	ATG ...	MWI ...	Ribo-seq	ATG		8	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HEK293T, hES, LCL, loayza_puch_2016, MDA-MB-231, U2OS
405411	120	AAA ...	KGT ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
631770	63	TTG ...	LEI ...	Ribo-seq	TTG	strong	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, Jurkat, MDA-MB-231, RPE-1, THP-1
899348	51	ATT ...	IFR ...	Ribo-seq	ATT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
631764	78	CTG ...	LKR ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
405846	216	ATA ...	IIK ...	Ribo-seq	ATA		1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
98785	33	ATG ...	MTQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
278629	33	ATG ...	MGQ ...	Ribo-seq	ATG	moderate	9	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, U2OS
480914	54	TTG ...	LRG ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, MDA-MB-231, RPE-1
816	57	ATG ...	MQP ...	Ribo-seq	ATG		10	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain, Brain_tumor, HAP1, HEK293, HeLa, HFF, MDA-MB-231, Monocyte, THP-1
480916	45	TTG ...	LAK ...	Ribo-seq	TTG	strong	15	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, Jurkat, MDA-MB-231, MM1S, Monocyte, RPE-1
1501214	63	ATG ...	MLL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
2305825	246	CTG ...	LRK ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231, RPE-1
480891	66	GTG ...	VLM ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, MDA-MB-231
405417	60	GAG ...	ESA ...	Ribo-seq	GAG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
1719875	99	ATG ...	MAK ...	Ribo-seq	ATG	strong	7	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
481133	228	CTG ...	LGA ...	Ribo-seq	CTG		5	sORFs_org_Human	Overlapping sORF Upstream	HEK293, HEK293T, HeLa, MM1S, RPE-1
3110578	36	CTG ...	LSG ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	hES
899320	33	GCG ...	ATQ ...	Ribo-seq	GCG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
313	51	ATG ...	MCH ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
3199601	48	GAA ...	ELK ...	Ribo-seq	GAA		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
278625	75	CTG ...	LRE ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, LCL, U2OS
480899	144	ATG ...	MTE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293T, MDA-MB-231, RPE-1
405409	108	ATA ...	IIK ...	Ribo-seq	ATA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
2305832	168	TTG ...	LQK ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
631780	75	GTG ...	VGP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Alternative sORF Upstream	HEK293, RPE-1, THP-1
278621	30	CTG ...	LER ...	Ribo-seq	CTG	strong	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
899331	48	TGC ...	CHN ...	Ribo-seq	TGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
632311	87	ATG ...	MCH ...	Ribo-seq	ATG		5	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, THP-1
278647	48	CTG ...	LSV ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
3199599	60	AGG ...	RLL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
1720462	183	ATG ...	MNK ...	Ribo-seq	ATG		6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, Monocyte, RPE-1
480906	39	TTG ...	LVL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, MDA-MB-231
278641	42	GTG ...	VGA ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, LCL
98792	78	CTG ...	LSL ...	Ribo-seq	CTG		25	sORFs_org_Human	Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2303675	60	CTG ...	LWK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HFF, MDA-MB-231
1719870	39	GTG ...	VKT ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
631761	54	TTG ...	LNI ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, hES, MDA-MB-231, RPE-1, THP-1
2305830	156	TTG ...	LKS ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
278643	198	CTG ...	LNS ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, LCL, MDA-MB-231, RPE-1, U2OS
900637	51	AGA ...	RIS ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
480918	51	TTG ...	LRL ...	Ribo-seq	TTG	weak	14	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1
311	84	TTG ...	LRN ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, Monocyte, RPE-1
524862	75	ATG ...	MER ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, THP-1, U2OS
278627	87	ATG ...	MTR ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, LCL, U2OS
480887	60	ATG ...	MMI ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293T, MDA-MB-231
309	45	TTG ...	LNN ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES
899322	51	CAG ...	QRF ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
480922	72	CTG ...	LPP ...	Ribo-seq	CTG		20	sORFs_org_Human	Overlapping sORF Upstream	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1134554	30	CTG ...	LLW ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, MM1S, Monocyte, RPE-1
1817492	114	ATG ...	MTG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
1719845	123	GTG ...	VQR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2632561	30	ATG ...	MQP ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, Monocyte
307	69	TTG ...	LKN ...	Ribo-seq	TTG		20	sORFs_org_Human	InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
481121	114	TTG ...	LFS ...	Ribo-seq	TTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293T, HeLa, MDA-MB-231
2303653	93	CTG ...	LHT ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
3199591	33	CCG ...	PKR ...	Ribo-seq	CCG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
481125	117	CTG ...	LPP ...	Ribo-seq	CTG		8	sORFs_org_Human	Overlapping sORF Upstream	HEK293, HEK293T, HeLa, MM1S, RPE-1
2303655	99	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
899344	39	CGG ...	RKM ...	Ribo-seq	CGG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
899352	69	CCG ...	PPR ...	Ribo-seq	CCG		1	sORFs_org_Human	Overlapping sORF Upstream	Jurkat
524872	33	TTG ...	LRR ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231, RPE-1, U2OS
3199608	66	GCC ...	ACR ...	Ribo-seq	GCC		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293
2092242	36	TTG ...	LKE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
1720460	162	CTG ...	LSE ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, MDA-MB-231, RPE-1
480920	33	ATG ...	MPS ...	Ribo-seq	ATG		20	sORFs_org_Human	InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, MM1S, RPE-1, THP-1, U2OS

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