ORF 3304201 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3304201

Chromosome

Strand

Start-stop positions

119036039-119080676

Nucleic length (bp)

4149

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MPA ...

Spliced: Yes

Exons

Exons start-end

119080676-119080628
119073937-119073747
119073577-119073441
119073053-119072890
119071085-119070886
119069654-119069446
119065570-119065399
119061328-119061224
119060844-119060746
119059718-119059602
119059397-119059212
119058303-119057956
119057040-119056936
119056853-119056740
119051321-119051199
119050674-119050521
119049985-119049801
119044142-119044054
119042772-119041994
119038439-119038238
119037309-119037119
119036268-119036039

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
305	ENST00000541549	protein_coding	HGNC:3271	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3304202	UNKNOWN_TRANSCRIPT		HGNC:3271	-	Ribo-seq			1	Erhard2018		HFF

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