Transcript 3822 | MetamORF

Transcript

ID CARD

MetamORF ID

3822

ENST00000538470

Name

DDB1-212

Strand

Biotype

retained_intron

Start-end positions

61300071-61303357

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

HGNC:2717

Aliases

DDB1,
ENSG00000167986, HGNC:2717, NCBI:1642,
OFF:DDB1

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3200381	177	GAG ...	ESW ...	Ribo-seq	GAG		1	sORFs_org_Human	Intronic sORF	HEK293
907717	36	CAG ...	QNQ ...	Ribo-seq	CAG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
102085	195	CTG ...	LVT ...	Ribo-seq	CTG		9	sORFs_org_Human	Intronic sORF	Brain, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, hES
3821	63	TTG ...	LRV ...	Ribo-seq	TTG		23	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
285911	111	CTG ...	LRR ...	Ribo-seq	CTG		4	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, guo_2014, HEK293, LCL
407590	144	AAT ...	NRL ...	Ribo-seq	AAT		2	sORFs_org_Human	Intronic sORF	HCT116, HEK293
3200373	60	AGA ...	RVS ...	Ribo-seq	AGA		1	sORFs_org_Human	Intronic sORF	HEK293
407594	189	ACC ...	TSL ...	Ribo-seq	ACC		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
3826	84	GTG ...	VFL ...	Ribo-seq	GTG		19	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, RPE-1, THP-1
3828	102	GTG ...	VFP ...	Ribo-seq	GTG		8	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, LCL
3200371	84	TAT ...	YDD ...	Ribo-seq	TAT	moderate	1	sORFs_org_Human	Intronic sORF	HEK293
102088	177	CTG ...	LGE ...	Ribo-seq	CTG		15	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, RPE-1, THP-1
3200379	168	ACC ...	TSC ...	Ribo-seq	ACC		1	sORFs_org_Human	Intronic sORF	HEK293
3824	60	CTG ...	LEI ...	Ribo-seq	CTG	moderate	23	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
937571	159	CTG ...	LLD ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	Brain, guo_2014
102081	183	CTG ...	LSE ...	Ribo-seq	CTG		9	sORFs_org_Human	Intronic sORF	Brain, Flp-In_T-REx-293, guo_2014, HEK293
937580	141	CTG ...	LVM ...	Ribo-seq	CTG		5	sORFs_org_Human	Intronic sORF	Brain, guo_2014, HEK293, HeLa, HFF
3832	42	CTG ...	LVQ ...	Ribo-seq	CTG	strong	17	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
937578	126	CTG ...	LGE ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	Brain
102083	192	GTG ...	VTS ...	Ribo-seq	GTG		10	sORFs_org_Human	Intronic sORF	Brain, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, hES
407584	81	GAC ...	DDG ...	Ribo-seq	GAC	moderate	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
482188	36	CTG ...	LQT ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231
407588	51	ACA ...	TPS ...	Ribo-seq	ACA	weak	3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
407592	180	TCA ...	SES ...	Ribo-seq	TCA		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat

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