Transcript 3942 | MetamORF

Transcript

ID CARD

MetamORF ID

3942

ENST00000537877

Name

DDB1-209

Strand

Biotype

retained_intron

Start-end positions

61313538-61322164

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAA ...

Genome browsers

UCSC

Gene

HGNC:2717

Aliases

DDB1,
ENSG00000167986, HGNC:2717, NCBI:1642,
OFF:DDB1

Chr 11

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3941	60	CTG ...	LSS ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	Intronic sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
3944	72	CTG ...	LTA ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	Intronic sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
907802	51	ATA ...	IAA ...	Ribo-seq	ATA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
907796	72	ATT ...	IGL ...	Ribo-seq	ATT		1	sORFs_org_Human	Intronic sORF	Jurkat
907806	108	TTC ...	FVL ...	Ribo-seq	TTC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
3200414	45	GAC ...	DFS ...	Ribo-seq	GAC	moderate	1	sORFs_org_Human	Intronic sORF	HEK293
907794	75	GTC ...	VFS ...	Ribo-seq	GTC		1	sORFs_org_Human	Intronic sORF	Jurkat
907800	90	AGC ...	SNH ...	Ribo-seq	AGC		1	sORFs_org_Human	Intronic sORF	Jurkat
907798	39	ACA ...	TNW ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
3946	81	TTG ...	LLV ...	Ribo-seq	TTG	weak	12	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
907792	54	AAG ...	KEV ...	Ribo-seq	AAG		1	sORFs_org_Human	Intronic sORF	Jurkat
907804	87	ACG ...	TSL ...	Ribo-seq	ACG	weak	1	sORFs_org_Human	Intronic sORF	Jurkat

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