Transcript 8573 | MetamORF

Transcript

ID CARD

MetamORF ID

8573

ENST00000537839

Name

SLC3A2-210

Strand

Biotype

processed_transcript

Start-end positions

62881699-62883998

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

HGNC:11026

Aliases

4F2,
4F2HC, 4T2HC, CD98,
CD98HC, ENSG00000168003, HGNC:11026,
MDU1, NACAE, NCBI:6520,
OFF:SLC3A2, SLC3A2

Chr 11

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
8572	279	CTG ...	LKG ...	Ribo-seq	CTG		27	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1, U2OS
8575	258	CTG ...	LSS ...	Ribo-seq	CTG		22	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S
409636	207	CAG ...	QKD ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	HCT116
8581	231	GTG ...	VLG ...	Ribo-seq	GTG		16	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016
8577	249	CTG ...	LKV ...	Ribo-seq	CTG		20	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S
1298997	237	TTG ...	LCW ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293T
8583	228	CTG ...	LGP ...	Ribo-seq	CTG		15	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, hES, HFF
8579	243	GTG ...	VKG ...	Ribo-seq	GTG		22	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016
409638	201	GAT ...	DDV ...	Ribo-seq	GAT		2	sORFs_org_Human	ncRNA sORF	HCT116, HEK293

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