Transcript 5380 | MetamORF

Transcript

ID CARD

MetamORF ID

5380

ENST00000533421

Name

SF3B2-213

Strand

Biotype

processed_transcript

Start-end positions

66052688-66055586

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

HGNC:10769

Aliases

Cus1,
ENSG00000087365, HGNC:10769, NCBI:10992,
OFF:SF3B2, SAP145, SF3b1,
SF3b145, SF3B2

Chr 11

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5379	120	GTG ...	VLN ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293
1596843	60	GTG ...	VER ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	hES, loayza_puch_2016
105366	219	CTG ...	LQP ...	Ribo-seq	CTG		16	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016, RPE-1, THP-1
2317638	93	TTG ...	LAF ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
2317636	99	TTG ...	LAL ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
287862	42	ATG ...	MGT ...	Ribo-seq	ATG		10	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
530117	165	TTG ...	LGP ...	Ribo-seq	TTG		21	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
1008667	75	CTG ...	LMQ ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa
534329	84	CTG ...	LKL ...	Ribo-seq	CTG		19	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
909929	174	TGG ...	WHR ...	Ribo-seq	TGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
938302	129	GTG ...	VAL ...	Ribo-seq	GTG		16	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1
287864	36	GTG ...	VSQ ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	ncRNA sORF	BJ, HEK293, hES, LCL, MDA-MB-231, U2OS
916649	90	GAG ...	ERL ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
909932	192	GGC ...	GFP ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
408241	135	GAG ...	EPV ...	Ribo-seq	GAG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
483871	120	GTG ...	VGE ...	Ribo-seq	GTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
408239	114	AAT ...	NRP ...	Ribo-seq	AAT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
5386	255	TTG ...	LGL ...	Ribo-seq	TTG		24	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
483869	144	TTG ...	LGP ...	Ribo-seq	TTG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
938306	105	CTG ...	LKL ...	Ribo-seq	CTG		11	sORFs_org_Human	ncRNA sORF	Brain, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016, MM1S
530121	141	GTG ...	VGE ...	Ribo-seq	GTG		21	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1, U2OS
534323	234	TTG ...	LGL ...	Ribo-seq	TTG		16	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, RPE-1, THP-1, U2OS
483875	102	CTG ...	LSE ...	Ribo-seq	CTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
483877	78	TTG ...	LAQ ...	Ribo-seq	TTG		20	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
909936	111	GAG ...	ERL ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1008665	78	TTG ...	LLM ...	Ribo-seq	TTG		4	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HEK293, HeLa
938308	99	TTG ...	LAQ ...	Ribo-seq	TTG		8	sORFs_org_Human	ncRNA sORF	Brain, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016
938304	123	CTG ...	LSE ...	Ribo-seq	CTG		14	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1
483879	57	TTG ...	LLM ...	Ribo-seq	TTG		15	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1
483873	108	GTG ...	VAL ...	Ribo-seq	GTG		24	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
102929	51	CTG ...	LQS ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
5382	117	CTG ...	LNR ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293
5384	102	TTG ...	LRG ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HEK293
5388	240	CTG ...	LQP ...	Ribo-seq	CTG		23	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
483881	54	CTG ...	LMQ ...	Ribo-seq	CTG		14	sORFs_org_Human	ncRNA sORF	BJ, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1
409719	114	GAG ...	EPV ...	Ribo-seq	GAG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
530119	42	GTG ...	VWV ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	ncRNA sORF	BJ, HEK293, MDA-MB-231, RPE-1, U2OS
916646	171	GGC ...	GFP ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat

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