Transcript 5440 | MetamORF

Transcript

ID CARD

MetamORF ID

5440

ENST00000530981

Name

SF3B2-210

Strand

Biotype

protein_coding

Start-end positions

66060691-66068878

CDS Start-stop positions

-66068745

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

HGNC:10769

Aliases

Cus1,
ENSG00000087365, HGNC:10769, NCBI:10992,
OFF:SF3B2, SAP145, SF3b1,
SF3b145, SF3B2

Chr 11

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5439	84	ATG ...	MAD ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	sORF	Blood, HEK293, LCL, MDA-MB-231, THP-1, U2OS
2054260	126	ATG ...	MLV ...	Ribo-seq	ATG		2	sORFs_org_Human	sORF	HEK293, HeLa
2054264	120	GTG ...	VAG ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF	HEK293, HeLa
287905	57	CTG ...	LEA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	sORF	HeLa, LCL, MDA-MB-231
408264	42	CGA ...	RDT ...	Ribo-seq	CGA	strong	1	sORFs_org_Human	sORF	HCT116
3201244	288	GCA ...	ANL ...	Ribo-seq	GCA		1	sORFs_org_Human	sORF	HEK293
294971	225	CTG ...	LNF ...	Ribo-seq	CTG		9	sORFs_org_Human	sORF	BJ, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
1596875	42	TTG ...	LRR ...	Ribo-seq	TTG		2	sORFs_org_Human	sORF	BJ, loayza_puch_2016
483906	102	ATG ...	MRQ ...	Ribo-seq	ATG		6	sORFs_org_Human	sORF	Blood, HAP1, HEK293T, HeLa, MDA-MB-231, RPE-1
483902	120	GTG ...	VMK ...	Ribo-seq	GTG		6	sORFs_org_Human	sORF	BJ, Blood, HEK293T, hES, MDA-MB-231, RPE-1
294951	45	ATG ...	MGT ...	Ribo-seq	ATG		7	sORFs_org_Human	sORF	HEK293T, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
3201253	150	AAT ...	NPQ ...	Ribo-seq	AAT		1	sORFs_org_Human	sORF	HEK293
3201247	243	TGT ...	CLE ...	Ribo-seq	TGT		1	sORFs_org_Human	sORF	HEK293
294957	297	GTG ...	VAG ...	Ribo-seq	GTG		9	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
2317660	30	ATG ...	MPT ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	sORF	MDA-MB-231
408262	51	GAA ...	EGV ...	Ribo-seq	GAA	strong	1	sORFs_org_Human	sORF	HCT116
1512726	84	TTG ...	LRR ...	Ribo-seq	TTG		5	sORFs_org_Human	sORF	BJ, HEK293, HeLa, HFF, MDA-MB-231
909985	87	CCC ...	PMA ...	Ribo-seq	CCC	weak	1	sORFs_org_Human	sORF	Jurkat
909994	54	CCT ...	PYH ...	Ribo-seq	CCT	weak	1	sORFs_org_Human	sORF	Jurkat
3201251	174	GGG ...	GNW ...	Ribo-seq	GGG		1	sORFs_org_Human	sORF	HEK293
909996	48	CAC ...	HSW ...	Ribo-seq	CAC	weak	1	sORFs_org_Human	sORF	Jurkat
909987	78	GAT ...	DCH ...	Ribo-seq	GAT	moderate	1	sORFs_org_Human	sORF	Jurkat
909999	30	ATC ...	ISA ...	Ribo-seq	ATC	weak	1	sORFs_org_Human	sORF	Jurkat
294959	273	ATG ...	MRL ...	Ribo-seq	ATG		9	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
287909	33	CTG ...	LEW ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, THP-1
294961	267	CTG ...	LGN ...	Ribo-seq	CTG		9	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
294963	252	ATG ...	MGT ...	Ribo-seq	ATG		8	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
5442	45	TTG ...	LPC ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	sORF	HEK293, HeLa, MDA-MB-231
294967	231	ATG ...	MLL ...	Ribo-seq	ATG		9	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
909990	33	TGC ...	CWW ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	sORF	Jurkat
294953	30	ATG ...	MRG ...	Ribo-seq	ATG		7	sORFs_org_Human	sORF	HEK293, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
635828	51	CTG ...	LFL ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1
5444	30	ATG ...	MDH ...	Ribo-seq	ATG	strong	6	sORFs_org_Human	sORF	HAP1, HEK293, HeLa, hES, MDA-MB-231
1512721	159	CTG ...	LMK ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	BJ, hES, MDA-MB-231, RPE-1
294965	240	TTG ...	LEP ...	Ribo-seq	TTG		9	sORFs_org_Human	sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
287907	36	CTG ...	LLE ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, THP-1
1297706	135	TTG ...	LGT ...	Ribo-seq	TTG		4	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa, MM1S
294973	81	CTG ...	LQT ...	Ribo-seq	CTG		7	sORFs_org_Human	sORF	HAP1, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
287903	72	GTG ...	VAL ...	Ribo-seq	GTG		7	sORFs_org_Human	sORF	BJ, HAP1, HEK293T, HeLa, LCL, MDA-MB-231, THP-1
916659	78	CTT ...	LYY ...	Ribo-seq	CTT		1	sORFs_org_Human	sORF	Jurkat
483900	156	ATG ...	MKN ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF	BJ, HEK293T, hES, MDA-MB-231, RPE-1
294969	228	CTG ...	LLN ...	Ribo-seq	CTG		8	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
2054262	123	CTG ...	LVA ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293, HeLa
409727	48	TCC ...	SMG ...	Ribo-seq	TCC		1	sORFs_org_Human	sORF	HCT116
294955	300	CTG ...	LVA ...	Ribo-seq	CTG		10	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
483904	117	ATG ...	MKT ...	Ribo-seq	ATG		6	sORFs_org_Human	sORF	BJ, Blood, HEK293T, hES, MDA-MB-231, RPE-1

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