Transcript 280896

Transcript

ID CARD

MetamORF ID

280896

ENST00000477008

Name

SEC24C-204

Strand

Biotype

processed_transcript

Start-end positions

73746867-73752102

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAT ...

Genome browsers

UCSC

Gene

HGNC:10705

Aliases

ENSG00000176986,
HGNC:10705, KIAA0079, NCBI:9632,
OFF:SEC24C, SEC24C

Chr 10

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
280902	57	ATG ...	MYR ...	Ribo-seq	ATG		7	sORFs_org_Human	ncRNA sORF	BJ, HAP1, HEK293, HeLa, hES, LCL
896369	75	GAG ...	EMY ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
901591	60	GAG ...	EMY ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
280900	69	TTG ...	LAK ...	Ribo-seq	TTG		9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, U2OS
901577	258	CAA ...	QSG ...	Ribo-seq	CAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
896363	90	GGC ...	GCI ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
523585	99	TTG ...	LWP ...	Ribo-seq	TTG		4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, U2OS
896353	135	AGT ...	STR ...	Ribo-seq	AGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
896337	237	TGG ...	WAA ...	Ribo-seq	TGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
280906	33	CTG ...	LFR ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HeLa, LCL
901571	282	TAT ...	YHQ ...	Ribo-seq	TAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
630676	114	GTG ...	VGN ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	MDA-MB-231, THP-1
2298631	162	TTG ...	LGS ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
896341	138	TAT ...	YHQ ...	Ribo-seq	TAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
896351	141	TGG ...	WPS ...	Ribo-seq	TGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
896355	126	CCA ...	PPS ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1718162	174	CTG ...	LSF ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	Blood, HEK293
896361	96	TGG ...	WPG ...	Ribo-seq	TGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
901585	255	AGT ...	STR ...	Ribo-seq	AGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
896343	132	CAG ...	QSS ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
901587	162	CCA ...	PPS ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
280895	84	CTG ...	LHM ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231
896349	84	TAT ...	YGA ...	Ribo-seq	TAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
896359	111	AGC ...	STG ...	Ribo-seq	AGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
896339	156	AGC ...	SPS ...	Ribo-seq	AGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
901573	276	CAG ...	QSS ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
896373	30	CCA ...	PSS ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1203942	93	GTG ...	VAR ...	Ribo-seq	GTG		6	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231
901575	264	GGT ...	GGQ ...	Ribo-seq	GGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
901593	72	AAT ...	NGP ...	Ribo-seq	AAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
901581	261	TGG ...	WPS ...	Ribo-seq	TGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
896371	36	AAT ...	NGP ...	Ribo-seq	AAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
901597	66	CCA ...	PSS ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
896367	75	GTT ...	VWP ...	Ribo-seq	GTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
896347	114	CAA ...	QSG ...	Ribo-seq	CAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
896345	120	GGT ...	GGQ ...	Ribo-seq	GGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
896365	84	ATA ...	IWP ...	Ribo-seq	ATA		1	sORFs_org_Human	ncRNA sORF	Jurkat
896357	150	CTT ...	LPR ...	Ribo-seq	CTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
280904	48	ATG ...	MGQ ...	Ribo-seq	ATG		5	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, LCL, U2OS
630674	117	ATG ...	MVG ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	MDA-MB-231, THP-1
280898	78	ATG ...	MAS ...	Ribo-seq	ATG		10	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, U2OS
901579	228	TAT ...	YGA ...	Ribo-seq	TAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
901589	135	CTT ...	LPR ...	Ribo-seq	CTT		1	sORFs_org_Human	ncRNA sORF	Jurkat

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