Transcript 4629 | MetamORF

Transcript

ID CARD

MetamORF ID

4629

ENST00000457660

Name

SLC3A2-205

Strand

Biotype

processed_transcript

Start-end positions

62881805-62886526

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

HGNC:11026

Aliases

4F2,
4F2HC, 4T2HC, CD98,
CD98HC, ENSG00000168003, HGNC:11026,
MDU1, NACAE, NCBI:6520,
OFF:SLC3A2, SLC3A2

Chr 11

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4639	189	GTG ...	VLG ...	Ribo-seq	GTG		33	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, Monocyte, RPE-1, THP-1, U2OS
286818	150	ATG ...	MSL ...	Ribo-seq	ATG		21	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, U2OS
3183272	204	TTG ...	LSQ ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HeLa
102526	138	TTG ...	LLQ ...	Ribo-seq	TTG		18	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016
529354	138	CTG ...	LTC ...	Ribo-seq	CTG		14	sORFs_org_Human	ncRNA sORF	Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, MM1S, U2OS
4635	201	GTG ...	VKG ...	Ribo-seq	GTG		38	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MM1S, Monocyte, RPE-1, THP-1, U2OS
482468	135	CTG ...	LQI ...	Ribo-seq	CTG		17	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016
4631	216	CTG ...	LSS ...	Ribo-seq	CTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, Monocyte, RPE-1, THP-1, U2OS
407841	123	TCG ...	STP ...	Ribo-seq	TCG		3	sORFs_org_Human	ncRNA sORF	HCT116, HeLa, THP-1
4641	186	CTG ...	LGP ...	Ribo-seq	CTG		32	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, Monocyte, RPE-1, THP-1, U2OS
4637	186	TTG ...	LCW ...	Ribo-seq	TTG		29	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, Monocyte, RPE-1, THP-1, U2OS
4628	237	CTG ...	LKG ...	Ribo-seq	CTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, Monocyte, RPE-1, THP-1, U2OS
3183274	174	TTG ...	LPA ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HeLa
407837	165	CAG ...	QKD ...	Ribo-seq	CAG		5	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
3183276	186	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HeLa
4633	207	CTG ...	LKV ...	Ribo-seq	CTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, Monocyte, RPE-1, THP-1, U2OS
908686	84	TCT ...	SEG ...	Ribo-seq	TCT	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
908689	177	ATT ...	IHK ...	Ribo-seq	ATT		1	sORFs_org_Human	ncRNA sORF	Jurkat
286816	153	ATG ...	MMS ...	Ribo-seq	ATG		22	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, U2OS
407839	159	GAT ...	DDV ...	Ribo-seq	GAT		5	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
1047858	111	TTG ...	LAP ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa

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