Transcript 1620 | MetamORF

Transcript

ID CARD

MetamORF ID

1620

ENST00000371142

Name

TM9SF3-201

Strand

Biotype

protein_coding

Start-end positions

96518109-96587052

CDS Start-stop positions

96522263-96586835

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:21529

Aliases

ENSG00000077147,
HGNC:21529, NCBI:56889, OFF:TM9SF3,
SMBP, TM9SF3

Chr 10

ORFs

49 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
100250	60	CTG ...	LRG ...	Ribo-seq	CTG		19	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
524366	30	ATG ...	MET ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
100239	81	TTG ...	LVQ ...	Ribo-seq	TTG		17	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
98072	33	TTG ...	LVQ ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, RPE-1
100256	84	TTG ...	LKI ...	Ribo-seq	TTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1619	51	ATG ...	MLG ...	Ribo-seq	ATG		21	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Brain_tumor, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
98062	51	TTG ...	LVT ...	Ribo-seq	TTG	moderate	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
281642	123	CTG ...	LAL ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
281640	114	TTG ...	LAW ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
1718988	60	TTG ...	LFA ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, RPE-1
1129061	30	ATG ...	MEI ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
526066	135	CTG ...	LLH ...	Ribo-seq	CTG		17	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
524370	60	ATG ...	MNM ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
524341	126	TTG ...	LAE ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	U2OS
404896	120	GAA ...	EIC ...	Ribo-seq	GAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
526062	123	CTG ...	LQS ...	Ribo-seq	CTG		16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
100243	108	TTG ...	LFA ...	Ribo-seq	TTG		16	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
2952211	231	TTG ...	LLH ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	hES
98076	36	ATG ...	MLQ ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
281629	30	ATG ...	MLD ...	Ribo-seq	ATG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, guo_2014, HEK293, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
100245	117	CTG ...	LRL ...	Ribo-seq	CTG		16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1816846	78	TTG ...	LDQ ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
98088	66	ATG ...	MSD ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
897757	201	TCT ...	SKS ...	Ribo-seq	TCT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2952209	228	TTG ...	LHL ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	hES
3199839	126	TGC ...	CLA ...	Ribo-seq	TGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
98074	48	GTG ...	VEF ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, Jurkat, RPE-1
526064	132	CTG ...	LHQ ...	Ribo-seq	CTG		17	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
281633	54	ATG ...	MVI ...	Ribo-seq	ATG		17	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
277002	138	TTG ...	LVQ ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, U2OS
1296664	78	ATG ...	MKL ...	Ribo-seq	ATG		1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
897754	174	CCG ...	PKS ...	Ribo-seq	CCG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1718990	69	CTG ...	LRL ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1
100252	60	TTG ...	LIR ...	Ribo-seq	TTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
901941	81	TCA ...	SKQ ...	Ribo-seq	TCA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
100241	96	GTG ...	VEF ...	Ribo-seq	GTG		16	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, Jurkat, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
277004	141	TTG ...	LLV ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, U2OS
3303502	1770	ATG ...	MRP ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
98060	33	GTG ...	VPL ...	Ribo-seq	GTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
281621	114	ATG ...	MFT ...	Ribo-seq	ATG		17	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
404898	195	TCT ...	SCW ...	Ribo-seq	TCT		2	sORFs_org_Human	InCDS Overlapping sORF	HCT116, Jurkat
281631	45	TTG ...	LEE ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, guo_2014, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
281627	75	ATG ...	MLQ ...	Ribo-seq	ATG		16	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2952207	222	CTG ...	LFF ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	hES
524339	42	TTG ...	LPG ...	Ribo-seq	TTG	weak	17	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
100254	72	TTG ...	LTN ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1816848	108	TTG ...	LTR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
96023	30	ATG ...	MDE ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
901944	129	CAT ...	HQL ...	Ribo-seq	CAT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat

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