ORF 3303502 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3303502

Chromosome

Strand

Start-stop positions

96522263-96586835

Nucleic length (bp)

1770

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MRP ...

Spliced: Yes

Exons

Exons start-end

96586835-96586734
96576829-96576634
96565426-96565304
96562138-96561978
96559736-96559659
96553059-96552928
96551411-96551245
96547989-96547895
96544206-96544076
96533190-96533051
96530608-96530540
96528177-96528031
96527496-96527413
96527289-96527213
96522330-96522263

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3303503	UNKNOWN_TRANSCRIPT		HGNC:21529	-	Ribo-seq			1	Erhard2018		HFF
1620	ENST00000371142	protein_coding	HGNC:21529	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF

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