Transcript 4590 | MetamORF

Transcript

ID CARD

MetamORF ID

4590

ENST00000294172

Name

NXF1-201

Strand

Biotype

protein_coding

Start-end positions

62792126-62805492

CDS Start-stop positions

62792476-62805356

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

HGNC:8071

Aliases

DKFZp667O0311,
ENSG00000162231, HGNC:8071, Mex67,
NCBI:10482, NXF1, OFF:NXF1,
TAP

Chr 11

ORFs

73 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1821567	30	CTG ...	LYG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
294510	84	CTG ...	LST ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, LCL
2328074	72	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
3314950	1860	ATG ...	MAD ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
294512	72	ATG ...	MGP ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, LCL, MDA-MB-231, MM1S
8527	60	CTG ...	LPR ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2316193	126	GTG ...	VIL ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
2316161	57	TTG ...	LPS ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, RPE-1
286761	150	ATG ...	MMN ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1
286759	147	ATG ...	MNA ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, LCL, MDA-MB-231, RPE-1
294526	201	TTG ...	LIF ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, LCL, MDA-MB-231, MM1S, RPE-1
294518	132	ATG ...	MLL ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231
294528	213	CTG ...	LSP ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, LCL, MDA-MB-231, MM1S, RPE-1
2316171	42	TTG ...	LML ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
638407	123	TTG ...	LIS ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, THP-1
294522	162	GTG ...	VIL ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
294498	105	ATG ...	MES ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
1821565	51	CTG ...	LAR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
908595	105	ATC ...	IAF ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2316146	90	CTG ...	LHP ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
482439	30	TTG ...	LKT ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	InCDS Overlapping sORF	HEK293T, HeLa, MDA-MB-231
2328078	96	ATG ...	MAM ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2328076	90	ATG ...	MSY ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1205928	30	TTG ...	LRK ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HeLa, MDA-MB-231
2316163	60	TTG ...	LLP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, RPE-1
286757	87	ATG ...	MVK ...	Ribo-seq	ATG	strong	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, LCL, MDA-MB-231, RPE-1
286739	45	GTG ...	VTP ...	Ribo-seq	GTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, LCL
2316177	72	ATG ...	MAM ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2316165	57	CTG ...	LET ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
908597	132	GTC ...	VGV ...	Ribo-seq	GTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2316175	66	ATG ...	MSY ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2316168	36	TTG ...	LKP ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2316154	147	ATG ...	MSY ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
482437	39	ATG ...	MTC ...	Ribo-seq	ATG	weak	5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HAP1, HEK293, HEK293T, HeLa, HFF, THP-1
294502	111	CTG ...	LSM ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL
294516	126	CTG ...	LCG ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231
2316173	48	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
635268	36	GTG ...	VFF ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, MDA-MB-231, RPE-1, THP-1
294520	150	ATG ...	MIE ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
286751	36	ATG ...	MGP ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231, MM1S, RPE-1
1205930	51	CTG ...	LVF ...	Ribo-seq	CTG	strong	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, MDA-MB-231, RPE-1
4589	72	ATG ...	MQF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
286763	39	CTG ...	LWH ...	Ribo-seq	CTG		16	sORFs_org_Human	Overlapping sORF Upstream	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
286753	51	CTG ...	LAP ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, LCL, MDA-MB-231, MM1S, RPE-1
2316156	150	ATG ...	MMS ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
286741	60	ATG ...	MET ...	Ribo-seq	ATG		5	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HEK293T, HeLa, LCL, MDA-MB-231
286755	84	GTG ...	VKE ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, LCL, MDA-MB-231, RPE-1
1821563	60	CTG ...	LED ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1139394	66	TTG ...	LML ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
482441	57	ATG ...	MRI ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HEK293T, HeLa, HFF, MDA-MB-231, RPE-1
1732090	63	TTG ...	LTS ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1726047	54	ATG ...	MAP ...	Ribo-seq	ATG	strong	3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
908603	156	AAC ...	NTM ...	Ribo-seq	AAC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
286749	33	ATG ...	MAE ...	Ribo-seq	ATG	moderate	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S
1139392	60	TTG ...	LKP ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2316148	120	CTG ...	LKR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1732092	81	ATG ...	MAP ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
294514	87	CTG ...	LAP ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, LCL, MDA-MB-231, MM1S
2316189	96	ATG ...	MLL ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
294524	189	GTG ...	VAW ...	Ribo-seq	GTG		9	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, LCL, MDA-MB-231, MM1S, RPE-1
2316191	114	ATG ...	MIE ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, MDA-MB-231
2316159	45	ATG ...	MSC ...	Ribo-seq	ATG	weak	4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
2328080	141	TTG ...	LTA ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2328067	93	TTG ...	LQW ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
286747	48	CTG ...	LST ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL
2316152	138	TTG ...	LCG ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
908593	30	CCT ...	PQR ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2316187	90	CTG ...	LCG ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
1205922	39	ATG ...	MLK ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, MDA-MB-231
1205932	66	CTG ...	LEE ...	Ribo-seq	CTG	strong	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, MDA-MB-231, RPE-1
294496	39	TTG ...	LLF ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL
2328071	63	ATG ...	MLK ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2316150	129	ATG ...	MPV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231

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