ORF 3314950 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3314950

Chromosome

Strand

Start-stop positions

62792476-62805356

Nucleic length (bp)

1860

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MAD ...

Spliced: Yes

Exons

Exons start-end

62805356-62805329
62803978-62803792
62803572-62803419
62802260-62802177
62802046-62801942
62801819-62801739
62801631-62801562
62801417-62801329
62801201-62801094
62800486-62800377
62798575-62798539
62797386-62797318
62797238-62797183
62796567-62796460
62796345-62796287
62796181-62796066
62795943-62795901
62795007-62794935
62794440-62794258
62792701-62792641
62792514-62792476

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4590	ENST00000294172	protein_coding	HGNC:8071	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3314951	UNKNOWN_TRANSCRIPT		HGNC:8071	-	Ribo-seq			1	Erhard2018		HFF

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