Transcript 8158 | MetamORF

Transcript

ID CARD

MetamORF ID

8158

ENST00000278412

Name

SSRP1-201

Strand

Biotype

protein_coding

Start-end positions

57325985-57335877

CDS Start-stop positions

57326407-57335121

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

HGNC:11327

Aliases

ENSG00000149136,
FACT80, HGNC:11327, NCBI:6749,
OFF:SSRP1, SSRP1

Chr 11

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
293846	75	ATG ...	MRA ...	Ribo-seq	ATG		12	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HAP1, HEK293, HeLa, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
8182	177	ATG ...	MRS ...	Ribo-seq	ATG		17	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
293850	87	TTG ...	LCL ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231, RPE-1
409533	135	CAG ...	QTI ...	Ribo-seq	CAG		2	sORFs_org_Human	InCDS Overlapping sORF	HCT116, HEK293
3201134	117	AAA ...	KLR ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
8186	81	TTG ...	LTT ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231
3201127	171	TGC ...	CCG ...	Ribo-seq	TGC		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
8192	138	GTG ...	VVV ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, THP-1
8174	126	TTG ...	LTL ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1
483600	114	ATG ...	MDL ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2548375	219	ATG ...	MPM ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
638168	114	ATG ...	MTQ ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
293848	78	GTG ...	VMR ...	Ribo-seq	GTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
293875	75	TTG ...	LRG ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S
482119	36	ATG ...	MCP ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
3314170	2130	ATG ...	MAE ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
8160	159	ATG ...	MPA ...	Ribo-seq	ATG		16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
8184	195	CTG ...	LCT ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
8164	201	ATG ...	MPP ...	Ribo-seq	ATG		16	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
1820945	66	ATG ...	MKC ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
3201120	33	AGA ...	RGT ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
3201138	255	AGG ...	RQA ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
3201122	105	TTT ...	FPR ...	Ribo-seq	TTT		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
8180	165	TTG ...	LST ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
916185	273	GCA ...	ALP ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3201132	108	CCA ...	PSR ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
8190	129	ATG ...	MTF ...	Ribo-seq	ATG		13	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, THP-1
8176	150	GTG ...	VVP ...	Ribo-seq	GTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
1820953	207	ATG ...	MSR ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
409535	171	CCT ...	PEE ...	Ribo-seq	CCT		3	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116, HEK293, Jurkat
1049486	114	TTG ...	LRP ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, MDA-MB-231, MM1S
634603	36	ATG ...	MPS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1632554	54	ATG ...	MNM ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
3201136	144	CCA ...	PLL ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
916187	60	CCA ...	PQY ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1731591	60	ATG ...	MKG ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231
8162	180	CTG ...	LHT ...	Ribo-seq	CTG		16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
3201124	117	GCA ...	ASR ...	Ribo-seq	GCA		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
409531	72	AGA ...	RAL ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
8178	156	TTG ...	LLV ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
8188	93	ATG ...	MAR ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, THP-1
8172	120	TTG ...	LKL ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, hES, MDA-MB-231, MM1S
8157	126	CTG ...	LAS ...	Ribo-seq	CTG		16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1

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