Transcript 279854

Transcript

ID CARD

MetamORF ID

279854

ENST00000263461

Name

WDR11-201

Strand

Biotype

protein_coding

Start-end positions

120851175-120909524

CDS Start-stop positions

120851421-120908713

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

HGNC:13831

Aliases

BRWD2,
DR11, ENSG00000120008, FLJ10506,
HGNC:13831, HH14, KIAA1351,
NCBI:55717, OFF:WDR11, SRI1,
WDR11, WDR15

Chr 10

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1720499	66	GTG ...	VST ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
279858	42	ATG ...	MEL ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
2541198	102	GTG ...	VPL ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
279860	39	TTG ...	LEW ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL
2305940	171	TTG ...	LIQ ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
279856	45	ATG ...	MME ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
2305948	117	ATG ...	MII ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
279853	33	GTG ...	VKS ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
1720506	45	ATG ...	MTC ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
3014859	57	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MM1S

Export data