Transcript 8213 | MetamORF

Transcript

ID CARD

MetamORF ID

8213

ENST00000227524

Name

PRPF19-201

Strand

Biotype

protein_coding

Start-end positions

60890730-60906588

CDS Start-stop positions

60891166-60906382

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:17896

Aliases

ENSG00000110107,
HGNC:17896, hPSO4, NCBI:27339,
NMP200, OFF:PRPF19, PRP19,
PRPF19, PSO4, SNEV,
UBOX4

Chr 11

ORFs

39 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
8219	171	CTG ...	LNK ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
3201146	105	GTT ...	VTT ...	Ribo-seq	GTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
916239	270	GCA ...	AFL ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
294124	213	CTG ...	LWV ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
8233	246	CTG ...	LTH ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, HeLa, MDA-MB-231
916235	144	GCC ...	AIP ...	Ribo-seq	GCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1297291	87	TTG ...	LTK ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T
3314443	1515	ATG ...	MSL ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
1298606	270	TTG ...	LSK ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T
1297289	75	CTG ...	LNK ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T
1297293	93	TTG ...	LCL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T
8221	183	TTG ...	LTK ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
8241	294	CTG ...	LQR ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
8212	165	ATG ...	MWP ...	Ribo-seq	ATG		16	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
1825317	57	ATG ...	MIS ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
8235	252	GTG ...	VGL ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, HeLa, MDA-MB-231
105154	114	CTG ...	LRM ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
8229	225	TTG ...	LGL ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
1297295	99	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T
8223	189	TTG ...	LCL ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
8239	276	GTG ...	VPA ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
482183	201	GTG ...	VLK ...	Ribo-seq	GTG	weak	13	sORFs_org_Human	Overlapping sORF Upstream	BJ, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
105156	150	CTG ...	LAT ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
8231	234	TTG ...	LVF ...	Ribo-seq	TTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
8237	264	CTG ...	LGS ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
8263	159	ATG ...	MFM ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
8203	66	ATG ...	MSR ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
294114	84	CTG ...	LMT ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
105152	72	CTG ...	LSS ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
8225	195	ATG ...	MSL ...	Ribo-seq	ATG		14	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
294112	81	ATG ...	MTP ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
8227	210	GTG ...	VGR ...	Ribo-seq	GTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
8215	207	GTG ...	VTY ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
8243	105	GTG ...	VSL ...	Ribo-seq	GTG		8	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HEK293T, HeLa, MDA-MB-231, THP-1, U2OS
1821148	57	ATG ...	MQL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
916237	255	TGG ...	WPW ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
294116	108	ATG ...	MVT ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
482181	198	CTG ...	LKA ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	Overlapping sORF Upstream	BJ, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
8217	102	ATG ...	MRP ...	Ribo-seq	ATG		1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF

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