ORF 3314443 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3314443

Chromosome

Strand

Start-stop positions

60891166-60906382

Nucleic length (bp)

1515

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MSL ...

Spliced: Yes

Exons

Exons start-end

60906382-60906364
60903861-60903712
60903535-60903459
60902881-60902740
60902656-60902583
60902465-60902403
60901540-60901499
60901369-60901295
60900929-60900854
60900691-60900582
60899304-60899149
60898931-60898862
60898626-60898541
60898271-60898101
60897951-60897846
60891263-60891166

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
8213	ENST00000227524	protein_coding	HGNC:17896	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3314441	UNKNOWN_TRANSCRIPT		HGNC:17896	-	Ribo-seq			1	Erhard2018		HFF

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