Transcript 13942 | MetamORF

Transcript

ID CARD

MetamORF ID

13942

ENST00000306014

Name

DDX54-201

Strand

Biotype

protein_coding

Start-end positions

113157174-113185479

CDS Start-stop positions

113158877-113185451

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

HGNC:20084

Aliases

APR-5,
DDX54, DP97, ENSG00000123064,
HGNC:20084, MGC2835, NCBI:79039,
OFF:DDX54

Chr 12

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
306453	72	TTG ...	LPG ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231
3331315	2649	ATG ...	MAA ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
306439	159	ATG ...	MIV ...	Ribo-seq	ATG		6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HCT116, HEK293, HeLa, HFF, LCL, MDA-MB-231
2339945	261	ATG ...	MAC ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2342842	285	GTG ...	VLC ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1833188	87	GTG ...	VAK ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
926471	84	TGC ...	CCT ...	Ribo-seq	TGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2342846	156	ATG ...	MPS ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, MDA-MB-231
306467	174	TTG ...	LRS ...	Ribo-seq	TTG		5	sORFs_org_Human	InCDS Overlapping sORF	BJ, HeLa, LCL, MDA-MB-231
306469	267	CTG ...	LPW ...	Ribo-seq	CTG		7	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
2342836	267	GTG ...	VWP ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
926473	111	ACA ...	TPR ...	Ribo-seq	ACA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1211910	102	CTG ...	LPC ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HeLa, MDA-MB-231
306437	153	GTG ...	VTR ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231
306471	285	CTG ...	LDL ...	Ribo-seq	CTG		7	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
2342848	159	GTG ...	VMP ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, MDA-MB-231
2342838	273	GTG ...	VQV ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
306441	162	TTG ...	LMI ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231
2342853	201	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
643589	42	TTG ...	LWP ...	Ribo-seq	TTG		5	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HEK293, HeLa, MDA-MB-231, THP-1
2342823	126	ATG ...	MCA ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2342821	189	CTG ...	LRR ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1520166	129	CTG ...	LTG ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231
306451	63	CTG ...	LAS ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231
2342827	150	TTG ...	LLI ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2342825	147	CTG ...	LIT ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2342834	258	GTG ...	VWM ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2339966	156	ATG ...	MAR ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
309349	162	ATG ...	MIV ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
304456	96	CTG ...	LRP ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, U2OS
13944	45	TTG ...	LWP ...	Ribo-seq	TTG		8	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
1212556	105	CTG ...	LPC ...	Ribo-seq	CTG		5	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
2342830	225	GTG ...	VWW ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2342840	282	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2339949	276	GTG ...	VWP ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
926469	39	CCA ...	PNS ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2339947	267	GTG ...	VWM ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
306435	102	GTG ...	VGS ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
13941	204	GTG ...	VVC ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2342832	252	ATG ...	MAC ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
306449	156	GTG ...	VWR ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
1740849	177	TTG ...	LKW ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
412792	150	ACT ...	TRT ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116

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