ORF 3331315 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3331315

Chromosome

Strand

Start-stop positions

113158877-113185451

Nucleic length (bp)

2649

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MAA ...

Spliced: Yes

Exons

Exons start-end

113185451-113185278
113181058-113180929
113180005-113179935
113179331-113179143
113179026-113178977
113177093-113177052
113176935-113176840
113175157-113175036
113174936-113174875
113174771-113174640
113172563-113172353
113169904-113169770
113166032-113165802
113165717-113165644
113164285-113164067
113163274-113163132
113163045-113162932
113161997-113161893
113161382-113161270
113159112-113158877

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
13942	ENST00000306014	protein_coding	HGNC:20084	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3331316	UNKNOWN_TRANSCRIPT		HGNC:20084	-	Ribo-seq			1	Erhard2018		HFF

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