Transcript 4009 | MetamORF

Transcript

ID CARD

MetamORF ID

4009

ENST00000539712

Name

DDB1-215

Strand

Biotype

retained_intron

Start-end positions

61321255-61326897

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

HGNC:2717

Aliases

DDB1,
ENSG00000167986, HGNC:2717, NCBI:1642,
OFF:DDB1

Chr 11

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
407625	117	GGG ...	GAF ...	Ribo-seq	GGG	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
907822	60	GGA ...	GRF ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
4013	96	CTG ...	LLA ...	Ribo-seq	CTG		27	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4008	78	TTG ...	LLW ...	Ribo-seq	TTG	weak	23	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
102144	96	TTG ...	LRI ...	Ribo-seq	TTG	weak	17	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, THP-1, U2OS
4015	51	TTG ...	LSI ...	Ribo-seq	TTG		13	sORFs_org_Human	Intronic sORF	BJ, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1
1130785	93	GTG ...	VVD ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HEK293
4011	132	CTG ...	LVT ...	Ribo-seq	CTG	moderate	25	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
285998	63	GTG ...	VRG ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	LCL, MM1S
102149	141	GTG ...	VAM ...	Ribo-seq	GTG		8	sORFs_org_Human	Intronic sORF	Brain, guo_2014, HEK293, HeLa, hES, HFF

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