Transcript 286019

Transcript

ID CARD

MetamORF ID

286019

ENST00000539426

Name

DDB1-214

Strand

Biotype

protein_coding

Start-end positions

61326779-61332835

CDS Start-stop positions

-61331584

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

HGNC:2717

Aliases

DDB1,
ENSG00000167986, HGNC:2717, NCBI:1642,
OFF:DDB1

Chr 11

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
483669	84	ATG ...	MSL ...	Ribo-seq	ATG		8	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231
286018	81	ATG ...	MRC ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	sORF	BJ, HEK293, HeLa, hES, LCL, MDA-MB-231
483667	78	TTG ...	LMS ...	Ribo-seq	TTG		6	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, hES, MDA-MB-231
483665	75	ATG ...	MSS ...	Ribo-seq	ATG		7	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, hES, Jurkat, MDA-MB-231
483663	60	ATG ...	MVA ...	Ribo-seq	ATG		6	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, hES, MDA-MB-231
482273	102	TTG ...	LMS ...	Ribo-seq	TTG		2	sORFs_org_Human	sORF	HEK293, HEK293T
482271	99	ATG ...	MSS ...	Ribo-seq	ATG		2	sORFs_org_Human	sORF	HEK293, HEK293T
294218	33	TTG ...	LST ...	Ribo-seq	TTG		4	sORFs_org_Human	sORF	HEK293T, hES, LCL, MDA-MB-231
482275	108	ATG ...	MSL ...	Ribo-seq	ATG		3	sORFs_org_Human	sORF	HEK293, HEK293T, hES
1825347	42	GTG ...	VRQ ...	Ribo-seq	GTG		1	sORFs_org_Human	sORF	HeLa
916276	90	AGC ...	SCM ...	Ribo-seq	AGC		1	sORFs_org_Human	sORF	Jurkat

Export data