Transcript 3968 | MetamORF

Transcript

ID CARD

MetamORF ID

3968

ENST00000535967

Name

DDB1-207

Strand

Biotype

retained_intron

Start-end positions

61313860-61322958

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

HGNC:2717

Aliases

DDB1,
ENSG00000167986, HGNC:2717, NCBI:1642,
OFF:DDB1

Chr 11

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3979	192	TTG ...	LDI ...	Ribo-seq	TTG		19	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, RPE-1, THP-1
907813	33	CAT ...	HSS ...	Ribo-seq	CAT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
407616	138	CGC ...	RSI ...	Ribo-seq	CGC		2	sORFs_org_Human	Intronic sORF	HCT116, HEK293
3985	201	GTG ...	VAC ...	Ribo-seq	GTG		23	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, RPE-1, THP-1, U2OS
3967	48	TTG ...	LCL ...	Ribo-seq	TTG	weak	18	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
3977	159	CTG ...	LSP ...	Ribo-seq	CTG		11	sORFs_org_Human	Intronic sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, RPE-1
1047626	48	TTG ...	LNY ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	BJ, HEK293, hES
3200421	87	GTA ...	VAI ...	Ribo-seq	GTA		1	sORFs_org_Human	Intronic sORF	HEK293
3200419	60	CCA ...	PLP ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	Intronic sORF	HEK293

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