Transcript 8279 | MetamORF

Transcript

ID CARD

MetamORF ID

8279

ENST00000301764

Name

DDB1-201

Strand

Biotype

protein_coding

Start-end positions

61299451-61333366

CDS Start-stop positions

61300136-61332968

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:2717

Aliases

DDB1,
ENSG00000167986, HGNC:2717, NCBI:1642,
OFF:DDB1

Chr 11

ORFs

71 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
916266	102	AAG ...	KSS ...	Ribo-seq	AAG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, Jurkat
8299	171	ATG ...	MNM ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
294170	87	CTG ...	LKR ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, U2OS
8326	84	TTG ...	LRV ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
3201157	84	TGC ...	CAQ ...	Ribo-seq	TGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
409560	45	AGT ...	SIR ...	Ribo-seq	AGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
8324	60	GTG ...	VPW ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231
8291	177	GTG ...	VLW ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, hES, MDA-MB-231
8295	111	TTG ...	LWA ...	Ribo-seq	TTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
294175	219	TTG ...	LTN ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
8356	261	TTG ...	LLS ...	Ribo-seq	TTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
1512169	57	TTG ...	LNY ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231
8332	114	CTG ...	LNP ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL
8344	180	CTG ...	LGL ...	Ribo-seq	CTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1
8334	120	ATG ...	MHL ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL
8313	144	ATG ...	MRS ...	Ribo-seq	ATG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
8285	156	ATG ...	MTI ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, hES, MDA-MB-231
294182	51	ATG ...	MTL ...	Ribo-seq	ATG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, hES, LCL, MDA-MB-231
3201153	135	ACC ...	TSC ...	Ribo-seq	ACC		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
294180	30	TTG ...	LWA ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, LCL, MDA-MB-231
3201155	60	ACA ...	TSP ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
8348	213	TTG ...	LDR ...	Ribo-seq	TTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
8309	276	CTG ...	LLL ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
294209	186	ATG ...	MVT ...	Ribo-seq	ATG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
294188	72	CTG ...	LTL ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231
8328	72	ATG ...	MIS ...	Ribo-seq	ATG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
3201159	99	CAA ...	QWC ...	Ribo-seq	CAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
294166	36	ATG ...	MEN ...	Ribo-seq	ATG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MM1S, RPE-1, U2OS
8338	135	GTG ...	VLV ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HEK293T, LCL
294207	183	GTG ...	VTN ...	Ribo-seq	GTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
294186	60	GTG ...	VRL ...	Ribo-seq	GTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231
8342	141	ATG ...	MEL ...	Ribo-seq	ATG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, hES, HFF, LCL, MDA-MB-231, MM1S
8305	255	TTG ...	LEK ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
8311	105	ATG ...	MSL ...	Ribo-seq	ATG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, THP-1
3201162	102	CAG ...	QQW ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
1094710	30	TTG ...	LGS ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231
8354	258	CTG ...	LSF ...	Ribo-seq	CTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
8330	99	TTG ...	LFQ ...	Ribo-seq	TTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1
8346	240	TTG ...	LSI ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HFF, LCL, MDA-MB-231, MM1S
3201169	150	CCA ...	PSM ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
916264	84	GGA ...	GRS ...	Ribo-seq	GGA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
8350	231	TTG ...	LGG ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
294184	54	CTG ...	LMT ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, hES, LCL, MDA-MB-231
8352	249	CTG ...	LQS ...	Ribo-seq	CTG		21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
8320	252	TTG ...	LPH ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HEK293T, HeLa, hES, HFF, THP-1
8318	156	TTG ...	LAP ...	Ribo-seq	TTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
294195	111	TTG ...	LTY ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, hES, LCL, MDA-MB-231
8293	66	TTG ...	LPT ...	Ribo-seq	TTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
8358	276	CTG ...	LSI ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
8278	90	GTG ...	VWG ...	Ribo-seq	GTG		23	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
8297	165	ATG ...	MPS ...	Ribo-seq	ATG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
8287	159	ATG ...	MMT ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, hES, MDA-MB-231
294202	231	TTG ...	LRG ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231
3201149	78	AGA ...	RVS ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
8281	132	ATG ...	MPL ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, hES, MDA-MB-231
1731789	48	ATG ...	MER ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
8336	132	TTG ...	LVC ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HEK293T, LCL
3201164	144	GCA ...	ASW ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
294168	57	TTG ...	LWS ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
8360	279	GTG ...	VLS ...	Ribo-seq	GTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
294162	81	TTG ...	LRV ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, U2OS
8307	267	ATG ...	MRP ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
483636	51	GTG ...	VAT ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
8340	135	TTG ...	LES ...	Ribo-seq	TTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S
3201167	93	GGA ...	GRS ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
294197	120	ATG ...	MPA ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, hES, LCL, MDA-MB-231
8301	192	ATG ...	MPT ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
8283	138	CTG ...	LKM ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, hES, MDA-MB-231
8289	174	CTG ...	LWK ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, hES, MDA-MB-231
8322	258	GTG ...	VEL ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HEK293T, HeLa, hES
8303	204	TTG ...	LKC ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1

Export data