Transcript 101740

Transcript

ID CARD

MetamORF ID

101740

ENST00000527784

Name

C11orf49-214

Strand

Biotype

nonsense_mediated_decay

Start-end positions

46936780-47161816

CDS Start-stop positions

46936806-47137645

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

HGNC:28720

Aliases

C11orf49,
ENSG00000149179, FLJ22210, HGNC:28720,
MGC4707, NCBI:79096, OFF:C11orf49

Chr 11

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3306730	150	ATG ...	MLS ...	Predicted Ribo-seq	ATG		2	Mackowiak2015 Johnstone2016	CDS NMD sORF	Brain_tumor, HEK293, HeLa, HFF
101742	60	CTG ...	LSP ...	Ribo-seq	CTG		15	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Brain, HEK293, HeLa, hES, HFF, RPE-1, THP-1
906566	84	TAC ...	YME ...	Ribo-seq	TAC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
1505491	33	GTG ...	VPA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, HeLa, MDA-MB-231, RPE-1
937227	57	TTG ...	LQL ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Brain, HEK293, HeLa, hES, MDA-MB-231, RPE-1
101744	69	GTG ...	VCQ ...	Ribo-seq	GTG		17	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
1987961	87	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS NMD Overlapping sORF	HeLa
1820565	39	ATG ...	MRT ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream NMD sORF	Brain_tumor, HEK293, HeLa, HFF
101739	72	TTG ...	LKP ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	BJ, Brain, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
937229	42	ATG ...	MSS ...	Ribo-seq	ATG	moderate	9	sORFs_org_Human Johnstone2016	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Brain, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
101746	60	CTG ...	LLE ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
906564	168	CCC ...	PYR ...	Ribo-seq	CCC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
1301604	36	GCG ...	APS ...	Ribo-seq	GCG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ

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