Transcript 98923 | MetamORF

Transcript

ID CARD

MetamORF ID

98923

ENST00000497136

Name

WDR11-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

120852616-120909520

CDS Start-stop positions

120865111-120873848

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

HGNC:13831

Aliases

BRWD2,
DR11, ENSG00000120008, FLJ10506,
HGNC:13831, HH14, KIAA1351,
NCBI:55717, OFF:WDR11, SRI1,
WDR11, WDR15

Chr 10

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2303982	54	ATG ...	MQI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative NMD sORF Upstream	HEK293, MDA-MB-231
899657	162	GAA ...	ENY ...	Ribo-seq	GAA		1	sORFs_org_Human	NMD sORF Upstream	Jurkat
1983971	72	GTG ...	VSD ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231, RPE-1
2303964	120	GTG ...	VVV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	NMD sORF Upstream	HEK293, MDA-MB-231
2303980	81	CTG ...	LAP ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	Alternative NMD sORF Upstream	HEK293, MDA-MB-231
278791	36	CTG ...	LMS ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative NMD sORF Upstream	HEK293, HeLa, LCL, MDA-MB-231
2303974	102	TTG ...	LCS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative NMD sORF Upstream	HEK293, MDA-MB-231
278803	39	CTG ...	LQF ...	Ribo-seq	CTG		4	sORFs_org_Human	InCDS NMD Overlapping sORF	HAP1, HEK293, LCL, MDA-MB-231
2303998	51	CTG ...	LVC ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231
1719997	36	ATG ...	MIY ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	InCDS NMD Overlapping sORF	Blood, MDA-MB-231, RPE-1
98922	171	TTG ...	LWN ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative NMD sORF Upstream	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1719999	111	GTG ...	VCC ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
2304002	33	CTG ...	LWN ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, MDA-MB-231
1134690	141	CTG ...	LLA ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative NMD sORF Upstream	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
2303988	39	GTG ...	VMV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231, RPE-1
98925	111	GTG ...	VLW ...	Ribo-seq	GTG		10	sORFs_org_Human	Alternative NMD sORF Upstream	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
2303967	114	GTG ...	VES ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	NMD sORF Upstream	HEK293, MDA-MB-231
2303969	147	ATG ...	MLP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative NMD sORF Upstream	MDA-MB-231
98927	186	TTG ...	LAY ...	Ribo-seq	TTG		2	sORFs_org_Human	NMD Overlapping sORF Upstream	HEK293
2304000	48	GTG ...	VCH ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231
278797	171	ATG ...	MFS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Alternative NMD sORF Upstream	HEK293, LCL, MDA-MB-231
278799	33	TTG ...	LYN ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
2953104	126	GTG ...	VSP ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS NMD Overlapping sORF	hES
98929	177	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD Overlapping sORF Upstream	HEK293
2953106	105	GTG ...	VSF ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS NMD Overlapping sORF	hES
278789	39	CTG ...	LLM ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative NMD sORF Upstream	HEK293, HeLa, LCL, MDA-MB-231
278801	30	CTG ...	LSM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS NMD Overlapping sORF	LCL, MDA-MB-231
2303972	126	TTG ...	LLS ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative NMD sORF Upstream	MDA-MB-231
1983965	36	ATG ...	MVY ...	Ribo-seq	ATG	strong	3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HeLa, MDA-MB-231, RPE-1
1719994	51	CTG ...	LEC ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	NMD sORF Upstream	Blood, HEK293, MDA-MB-231
278793	33	ATG ...	MSM ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Alternative NMD sORF Upstream	HEK293, HeLa, hES, LCL
278795	33	CTG ...	LGC ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Alternative NMD sORF Upstream	HEK293, LCL, MDA-MB-231, RPE-1
1983968	141	GTG ...	VTK ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231, RPE-1
2303978	90	ATG ...	MPT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative NMD sORF Upstream	MDA-MB-231

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