Transcript 9874 | MetamORF

Transcript

ID CARD

MetamORF ID

9874

ENST00000646070

Name

Strand

Biotype

processed_transcript

Start-end positions

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

Genome browsers

Gene

HGNC:1919

Aliases

CHD4,
ENSG00000111642, HGNC:1919, Mi-2b,
Mi2-BETA, NCBI:1108, OFF:CHD4

Chr 12

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
918875	129	TTC ...	FLL ...	Ribo-seq	TTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
9873	33	CTG ...	LTG ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231
296855	66	ATG ...	MIS ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	Blood, LCL
9886	87	CTG ...	LGA ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
106220	153	CTG ...	LGS ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HFF
296853	51	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	LCL
410217	240	TTT ...	FVT ...	Ribo-seq	TTT		1	sORFs_org_Human	ncRNA sORF	HCT116
9880	60	CTG ...	LLT ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
707960	288	CAA ...	QNK ...	Ribo-seq	CAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
296861	111	CTG ...	LGW ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	Blood, HAP1, LCL, MDA-MB-231
9888	126	TTG ...	LLS ...	Ribo-seq	TTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
106232	237	GTG ...	VTR ...	Ribo-seq	GTG		16	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, RPE-1, U2OS
9890	123	GTG ...	VLS ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
9876	39	ATG ...	MTL ...	Ribo-seq	ATG		7	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, LCL, MDA-MB-231
106224	168	GTG ...	VVR ...	Ribo-seq	GTG		6	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HFF
296857	69	TTG ...	LMI ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	Blood, LCL, MDA-MB-231
2331440	48	GTG ...	VRQ ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
918871	267	CAA ...	QNK ...	Ribo-seq	CAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
918873	123	CTT ...	LST ...	Ribo-seq	CTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
106228	201	GTG ...	VAK ...	Ribo-seq	GTG		10	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa, hES, HFF, RPE-1
9884	78	TTG ...	LES ...	Ribo-seq	TTG		9	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, LCL, MDA-MB-231
296859	93	CTG ...	LDL ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	Blood, HAP1, LCL, MDA-MB-231
106222	165	GTG ...	VRP ...	Ribo-seq	GTG		6	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HFF
9882	90	CTG ...	LAT ...	Ribo-seq	CTG		16	sORFs_org_Human	ncRNA sORF	guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
484256	42	GTG ...	VLS ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HEK293T, HeLa
106230	222	GTG ...	VEE ...	Ribo-seq	GTG		11	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HEK293T, HeLa, hES, HFF, RPE-1
106226	180	CTG ...	LTH ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, hES, HFF
9878	57	CTG ...	LTQ ...	Ribo-seq	CTG		7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
1733926	57	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	Blood

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