Transcript 95462 | MetamORF

Transcript

ID CARD

MetamORF ID

95462

ENST00000635550

Name

SEC24C-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

73744400-73771235

CDS Start-stop positions

73746833-73760215

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

HGNC:10705

Aliases

ENSG00000176986,
HGNC:10705, KIAA0079, NCBI:9632,
OFF:SEC24C, SEC24C

Chr 10

ORFs

78 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
896375	174	CAG ...	QPF ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
523596	57	CTG ...	LLD ...	Ribo-seq	CTG		16	sORFs_org_Human	Downstream NMD sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
1816482	57	ATG ...	MPS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Downstream NMD sORF	HeLa
97496	111	TTG ...	LAQ ...	Ribo-seq	TTG		17	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
95497	99	CTG ...	LPV ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, guo_2014, HEK293, HeLa, hES, HFF, RPE-1
1816484	45	CTG ...	LVL ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Downstream NMD sORF	HeLa
1718228	36	TTG ...	LIA ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	Downstream NMD sORF	Blood, HeLa, MDA-MB-231
97484	66	CTG ...	LAA ...	Ribo-seq	CTG		7	sORFs_org_Human	Downstream NMD sORF	Brain, HEK293, hES, HFF
896329	264	CCA ...	PVS ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
1046326	156	CTG ...	LPI ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	guo_2014
1816478	84	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Human	Downstream NMD sORF	HeLa
1718173	162	CTG ...	LTR ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	Blood
523598	54	CTG ...	LDG ...	Ribo-seq	CTG		15	sORFs_org_Human	Downstream NMD sORF	BJ, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
896394	159	TTT ...	FVT ...	Ribo-seq	TTT		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
97474	186	CTG ...	LPG ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, hES, HFF, RPE-1
1816476	42	CTG ...	LSY ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa, MDA-MB-231, RPE-1
1718182	45	TTG ...	LAL ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Alternative Downstream NMD sORF	Blood
1046328	129	CTG ...	LKN ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	guo_2014
95507	105	CTG ...	LFK ...	Ribo-seq	CTG	moderate	20	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
97488	36	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Human	Downstream NMD sORF	HEK293
275459	129	ATG ...	MQV ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HAP1, HEK293, Jurkat, LCL, MDA-MB-231
275445	48	CTG ...	LGQ ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative NMD sORF Upstream	LCL
97500	78	GTG ...	VAD ...	Ribo-seq	GTG		18	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896390	117	TCC ...	SYN ...	Ribo-seq	TCC		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
275463	57	ATG ...	MLM ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa, LCL, MDA-MB-231
2298628	174	CTG ...	LCH ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231
1718193	51	GTG ...	VPI ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	Blood
1718178	39	CTG ...	LQS ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, MDA-MB-231
1718191	36	TTG ...	LYQ ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Downstream NMD sORF	Blood, RPE-1
1718180	39	TTG ...	LLG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Downstream NMD sORF	Blood, HeLa
97481	90	GTG ...	VAT ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293
95505	132	GTG ...	VKQ ...	Ribo-seq	GTG	moderate	20	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
896407	48	GAC ...	DFL ...	Ribo-seq	GAC	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
95477	114	GTG ...	VDA ...	Ribo-seq	GTG		2	sORFs_org_Human	Downstream NMD sORF	HEK293
95499	90	CTG ...	LDN ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, guo_2014, HEK293, hES, HFF, RPE-1
630689	78	GTG ...	VCR ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Downstream NMD sORF	BJ, MDA-MB-231, THP-1
1718184	39	TTG ...	LSP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, MDA-MB-231
896392	36	CGT ...	RLL ...	Ribo-seq	CGT	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
1816480	72	TTG ...	LTS ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Downstream NMD sORF	HeLa
275461	63	GTG ...	VWM ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa, LCL, MDA-MB-231
97494	123	GTG ...	VKS ...	Ribo-seq	GTG		19	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
95464	153	CTG ...	LVC ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	CDS NMD sORF	HEK293, MDA-MB-231
896396	105	CAG ...	QPQ ...	Ribo-seq	CAG		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
95503	135	GTG ...	VVK ...	Ribo-seq	GTG	strong	22	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
95473	72	GTG ...	VPL ...	Ribo-seq	GTG		11	sORFs_org_Human	Downstream NMD sORF	BJ, Brain, guo_2014, HEK293, hES, HFF, U2OS
97486	45	CTG ...	LAR ...	Ribo-seq	CTG		2	sORFs_org_Human	Downstream NMD sORF	HEK293
1718195	45	GTG ...	VCG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream NMD sORF	Blood
95513	72	CTG ...	LSG ...	Ribo-seq	CTG	moderate	20	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
95475	135	CTG ...	LDH ...	Ribo-seq	CTG		5	sORFs_org_Human	Downstream NMD sORF	guo_2014, HEK293, hES
1499281	48	CTG ...	LQP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, MDA-MB-231
2298698	129	ATG ...	MGI ...	Ribo-seq	ATG		1	sORFs_org_Human	Downstream NMD sORF	MDA-MB-231
97479	129	GTG ...	VLQ ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HFF
97498	87	GTG ...	VSD ...	Ribo-seq	GTG		18	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1718171	30	CTG ...	LEY ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, MDA-MB-231
2298652	66	ATG ...	MTG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
95511	87	GTG ...	VED ...	Ribo-seq	GTG	moderate	20	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
97492	141	GTG ...	VLH ...	Ribo-seq	GTG		18	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
896333	249	TGT ...	CAT ...	Ribo-seq	TGT		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
523600	42	CTG ...	LVN ...	Ribo-seq	CTG		12	sORFs_org_Human	Downstream NMD sORF	guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
2298650	72	TTG ...	LKM ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
896335	165	CAT ...	HLG ...	Ribo-seq	CAT		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
95509	90	CTG ...	LVE ...	Ribo-seq	CTG	moderate	20	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
275483	63	GTG ...	VGE ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Downstream NMD sORF	HeLa, LCL, MDA-MB-231
95515	51	GTG ...	VDF ...	Ribo-seq	GTG	moderate	22	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, RPE-1, THP-1, U2OS
97472	177	GTG ...	VPP ...	Ribo-seq	GTG		11	sORFs_org_Human	InCDS NMD Overlapping sORF	Brain, HAP1, HEK293, hES, HFF, MDA-MB-231, RPE-1, THP-1
523594	63	GTG ...	VPL ...	Ribo-seq	GTG		17	sORFs_org_Human	Downstream NMD sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
97476	156	TTG ...	LAP ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HFF, RPE-1
95461	147	GTG ...	VGN ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HFF
1718169	36	TTG ...	LLL ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, MDA-MB-231
97502	138	TTG ...	LDQ ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative Downstream NMD sORF	guo_2014, HEK293, HFF
275443	75	CTG ...	LNA ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF Upstream	LCL
630678	198	CTG ...	LLA ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS NMD Overlapping sORF	Blood, MDA-MB-231, THP-1
896331	186	GTT ...	VPP ...	Ribo-seq	GTT		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
2298638	144	ATG ...	MAP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	CDS NMD sORF	MDA-MB-231
1816474	51	ATG ...	MTA ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa, MDA-MB-231
95501	78	CTG ...	LSK ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative Downstream NMD sORF	guo_2014, HEK293, hES, HFF, RPE-1
275485	48	ATG ...	MWT ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	Downstream NMD sORF	Blood, HeLa, LCL, MDA-MB-231
1202225	78	CTG ...	LTW ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HEK293, MDA-MB-231

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