Transcript 87674 | MetamORF

Transcript

ID CARD

MetamORF ID

87674

ENST00000373625

Name

KPNA6-201

Strand

Biotype

protein_coding

Start-end positions

32108038-32176568

CDS Start-stop positions

32108131-32170894

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

HGNC:6399

Aliases

ENSG00000025800,
FLJ11249, HGNC:6399, IPOA7,
KPNA6, KPNA7, MGC17918,
NCBI:23633, OFF:KPNA6

Chr 1

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1824659	33	GTG ...	VRV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
884300	81	AGG ...	RSQ ...	Ribo-seq	AGG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
884344	42	CAG ...	QVP ...	Ribo-seq	CAG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1824633	30	CTG ...	LAL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1824649	72	ATG ...	MIQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1824684	60	CTG ...	LGG ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Downstream sORF	HeLa
1824672	93	CTG ...	LFS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
247434	36	CTG ...	LLA ...	Ribo-seq	CTG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
1824601	30	ATG ...	MEP ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1824668	99	CTG ...	LNP ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1824598	54	TTG ...	LPG ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
87673	36	TTG ...	LWP ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
1824690	30	TTG ...	LKE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1824661	168	GTG ...	VYL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1824677	45	ATG ...	MAW ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1824652	72	CTG ...	LLF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1824657	33	CTG ...	LGY ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
884325	114	GTA ...	VQG ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1824665	129	CTG ...	LTS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
884340	54	AGA ...	RSG ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
247438	60	CTG ...	LSR ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
1824655	57	CTG ...	LQG ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1824663	153	CTG ...	LPS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
247436	81	ATG ...	MPH ...	Ribo-seq	ATG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
884332	66	GAA ...	EPL ...	Ribo-seq	GAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1824670	102	ATG ...	MPA ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Downstream sORF	HeLa

Export data