Transcript 6692 | MetamORF

Transcript

ID CARD

MetamORF ID

6692

ENST00000431736

Name

UBE4A-202

Strand

Biotype

protein_coding

Start-end positions

118359644-118399207

CDS Start-stop positions

118365081-118396440

CDS Relative positions

Sequences

Transcript sequence

CGT ...

Genome browsers

UCSC

Gene

HGNC:12499

Aliases

E4,
ENSG00000110344, HGNC:12499, KIAA0126,
NCBI:9354, OFF:UBE4A, UBE4A,
UBOX2, UFD2

Chr 11

ORFs

80 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
6696	87	ATG ...	MNS ...	Ribo-seq	ATG	weak	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
290841	30	TTG ...	LTK ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, LCL, MDA-MB-231, RPE-1
2325178	204	CTG ...	LLI ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1729204	168	CTG ...	LFA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1729192	33	ATG ...	MRK ...	Ribo-seq	ATG	weak	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1729200	180	CTG ...	LAW ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
913570	75	CTG ...	LCP ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Jurkat, MDA-MB-231
6700	66	CTG ...	LRL ...	Ribo-seq	CTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
913590	57	CCA ...	PIR ...	Ribo-seq	CCA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
290834	54	TTG ...	LCV ...	Ribo-seq	TTG	weak	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MM1S, RPE-1, U2OS
913582	174	TGG ...	WKL ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3310858	21	ATG ...	MED ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative sORF Upstream	Brain_tumor, HEK293, HeLa, HFF
913566	90	AGA ...	REP ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
6691	141	ATG ...	MNS ...	Ribo-seq	ATG	weak	18	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
1729202	102	TTG ...	LET ...	Ribo-seq	TTG	strong	3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
915290	192	ATG ...	MQE ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, Jurkat, MDA-MB-231
913556	33	GAC ...	DFF ...	Ribo-seq	GAC	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2322489	66	ATG ...	MQE ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
409342	48	CTG ...	LPL ...	Ribo-seq	CTG		14	sORFs_org_Human	Overlapping sORF Upstream	BJ, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1
913578	225	GAA ...	ELT ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1729195	57	ATG ...	MHI ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1729206	87	ATG ...	MQM ...	Ribo-seq	ATG	weak	3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF
1729208	81	ATG ...	MQA ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293
1730364	63	ATG ...	MHI ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
636936	66	TTG ...	LLL ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, MDA-MB-231, RPE-1, THP-1
913586	84	CAA ...	QMQ ...	Ribo-seq	CAA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
290843	33	CTG ...	LSF ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231
913580	108	CCT ...	PGL ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1729187	99	TTG ...	LQC ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, RPE-1
915276	63	GTC ...	VVA ...	Ribo-seq	GTC		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
1729210	135	TTG ...	LGQ ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
913564	33	ACT ...	TPA ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2322506	36	ATG ...	MMK ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
6694	120	ATG ...	MTR ...	Ribo-seq	ATG	weak	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1729234	39	ATG ...	MQM ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
915292	159	ACT ...	TPA ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1729185	78	CTG ...	LLI ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
913548	33	AAA ...	KYV ...	Ribo-seq	AAA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
913542	42	TGC ...	CGN ...	Ribo-seq	TGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1207313	54	TTG ...	LAP ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, MDA-MB-231
915284	39	GAT ...	DPK ...	Ribo-seq	GAT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2959010	36	TTG ...	LQT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES
2959008	48	ATG ...	MPA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, hES, HFF
915286	207	TCT ...	SLL ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
637712	63	CTG ...	LAL ...	Ribo-seq	CTG		16	sORFs_org_Human	Overlapping sORF Upstream	BJ, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, Jurkat, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
290848	33	ATG ...	MKN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
913568	90	AGT ...	SAE ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
913544	117	ACT ...	TRI ...	Ribo-seq	ACT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1207311	63	CTG ...	LLF ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, MDA-MB-231, RPE-1
913560	81	TCT ...	SLL ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
913539	33	TCT ...	SPT ...	Ribo-seq	TCT	moderate	1	sORFs_org_Human	sORF Upstream	Jurkat
1729215	60	ATG ...	MLS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
290846	51	CTG ...	LSD ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
913546	30	CTC ...	LIP ...	Ribo-seq	CTC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
290839	33	ATG ...	MLT ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, LCL, MDA-MB-231, RPE-1
915294	57	AGG ...	RPT ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
637708	75	GTG ...	VSS ...	Ribo-seq	GTG		16	sORFs_org_Human	Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
913552	39	GAT ...	DPK ...	Ribo-seq	GAT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1509892	36	ATG ...	MGK ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1730368	42	ATG ...	MMP ...	Ribo-seq	ATG		1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2322487	75	CTG ...	LIE ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
290832	45	ATG ...	MAS ...	Ribo-seq	ATG	strong	5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, LCL
913562	72	ATC ...	IEM ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
292394	114	CTG ...	LFD ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
915288	198	ATC ...	IEM ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
636938	42	CTG ...	LMP ...	Ribo-seq	CTG	weak	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, MDA-MB-231, RPE-1, THP-1
290824	30	CTG ...	LDG ...	Ribo-seq	CTG	strong	19	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2325180	201	CTG ...	LIE ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
531979	39	ATG ...	MPN ...	Ribo-seq	ATG	weak	12	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HeLa, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
2322492	63	GTG ...	VQK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
637710	66	CTG ...	LLA ...	Ribo-seq	CTG		15	sORFs_org_Human	Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
915280	39	TGC ...	CGN ...	Ribo-seq	TGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
913584	96	ACT ...	TVC ...	Ribo-seq	ACT	strong	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1310108	69	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF Upstream	HEK293
290850	42	CTG ...	LCR ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, LCL, MDA-MB-231, U2OS
913574	219	AGA ...	RIH ...	Ribo-seq	AGA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
6698	72	CTG ...	LWL ...	Ribo-seq	CTG	moderate	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
913554	45	CTT ...	LRS ...	Ribo-seq	CTT	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
3310864	3222	ATG ...	MTD ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
1729198	192	CTG ...	LYL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231

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