Transcript 6367 | MetamORF

Transcript

ID CARD

MetamORF ID

6367

ENST00000525420

Name

DCUN1D5-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

103066488-103092194

CDS Start-stop positions

103083320-103091872

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

HGNC:28409

Aliases

DCUN1D5,
ENSG00000137692, FLJ32431, HGNC:28409,
MGC2714, NCBI:84259, OFF:DCUN1D5

Chr 11

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
636742	270	CTG ...	LSA ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	HEK293, HEK293T, HeLa, hES, MM1S, THP-1
912657	63	GGA ...	GRM ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
912651	54	ATA ...	IFR ...	Ribo-seq	ATA		1	sORFs_org_Human	NMD sORF	Jurkat
636749	291	GTG ...	VTG ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	HEK293, HEK293T, HeLa, hES, MM1S, THP-1
912653	42	AAA ...	KSY ...	Ribo-seq	AAA	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
290121	51	CTG ...	LFF ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	LCL
912668	60	AAG ...	KCL ...	Ribo-seq	AAG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
912662	63	GCT ...	AES ...	Ribo-seq	GCT		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
636751	300	TTG ...	LLA ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	HEK293, HEK293T, HeLa, MM1S, THP-1
1728609	30	CTG ...	LHR ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Downstream NMD sORF	Blood, HEK293, hES, MDA-MB-231
1728611	54	GTG ...	VTA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
912664	33	GCA ...	AGN ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
636744	201	CTG ...	LPR ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	Alternative NMD sORF Upstream	BJ, HEK293, HEK293T, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1
408822	207	GTG ...	VEL ...	Ribo-seq	GTG	moderate	11	sORFs_org_Human	Alternative NMD sORF Upstream	BJ, HCT116, HEK293, HEK293T, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1
912655	39	TTC ...	FIT ...	Ribo-seq	TTC		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
1318547	54	CTG ...	LAW ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	hES
6366	69	TTG ...	LEA ...	Ribo-seq	TTG		26	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
482995	75	GTG ...	VER ...	Ribo-seq	GTG		6	sORFs_org_Human	InCDS NMD Overlapping sORF	Blood, HEK293, HEK293T, RPE-1
912666	42	TAT ...	YEY ...	Ribo-seq	TAT		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
636747	210	CTG ...	LVE ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	Alternative NMD sORF Upstream	BJ, HEK293, HEK293T, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1
3317386	93	ATG ...	MPV ...	Predicted	ATG		1	Mackowiak2015	CDS NMD sORF
408814	42	ACC ...	TKE ...	Ribo-seq	ACC		2	sORFs_org_Human	Downstream NMD sORF	HCT116, Jurkat
1509484	39	CTG ...	LKA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HEK293, MDA-MB-231

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