Transcript 608 | MetamORF

Transcript

ID CARD

MetamORF ID

608

ENST00000368547

Name

ECHS1-201

Strand

Biotype

protein_coding

Start-end positions

133362480-133373689

CDS Start-stop positions

133362868-133373333

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

HGNC:3151

Aliases

ECHS1,
ENSG00000127884, HGNC:3151, NCBI:1892,
OFF:ECHS1, SCEH

Chr 10

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
279268	60	GTG ...	VLT ...	Ribo-seq	GTG	weak	23	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
610	33	CTG ...	LSR ...	Ribo-seq	CTG		19	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
1004	216	ATG ...	MTS ...	Ribo-seq	ATG		21	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
99320	42	ATG ...	MPV ...	Ribo-seq	ATG	weak	20	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
1817801	30	GTG ...	VVV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1817803	180	CTG ...	LRG ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
612	66	CTG ...	LRP ...	Ribo-seq	CTG		18	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
99316	30	GTG ...	VCR ...	Ribo-seq	GTG	weak	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
992	129	CTG ...	LVT ...	Ribo-seq	CTG		23	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
1006	225	GTG ...	VPA ...	Ribo-seq	GTG		20	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
1817795	117	CTG ...	LTG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1002	201	CTG ...	LQV ...	Ribo-seq	CTG		25	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
632113	66	TTG ...	LRH ...	Ribo-seq	TTG	weak	13	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
632118	36	GTG ...	VRR ...	Ribo-seq	GTG	weak	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
99318	87	TTG ...	LSA ...	Ribo-seq	TTG	moderate	17	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
1817809	279	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
632115	69	CTG ...	LLR ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
900268	33	GTC ...	VAG ...	Ribo-seq	GTC	strong	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
99615	39	TTG ...	LQL ...	Ribo-seq	TTG		17	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
998	168	GTG ...	VLL ...	Ribo-seq	GTG		23	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
994	162	TTG ...	LGS ...	Ribo-seq	TTG		23	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
607	33	CTG ...	LEL ...	Ribo-seq	CTG	moderate	18	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
1817799	150	ATG ...	MTA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
900277	51	CCA ...	PTE ...	Ribo-seq	CCA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
990	126	GTG ...	VTG ...	Ribo-seq	GTG		22	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
99604	270	ATG ...	MEA ...	Ribo-seq	ATG		5	sORFs_org_Human	CDS sORF	guo_2014, HEK293
900273	42	TCA ...	SRS ...	Ribo-seq	TCA		3	sORFs_org_Human	InCDS Overlapping sORF	HeLa, Jurkat, THP-1
3199693	84	CCT ...	PAC ...	Ribo-seq	CCT		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
996	165	CTG ...	LLG ...	Ribo-seq	CTG		24	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1
900270	60	CCA ...	PET ...	Ribo-seq	CCA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
632124	33	GTG ...	VSC ...	Ribo-seq	GTG	weak	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
632110	36	GTG ...	VQK ...	Ribo-seq	GTG	moderate	12	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
1817791	84	CTG ...	LRS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1817797	126	GTG ...	VRV ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
900275	63	ACT ...	TGT ...	Ribo-seq	ACT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1817805	183	TTG ...	LLR ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
3304573	873	ATG ...	MAA ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
1817793	87	CTG ...	LLR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1000	195	GTG ...	VRA ...	Ribo-seq	GTG		24	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
900850	66	TCA ...	SRS ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
900852	87	ACT ...	TGT ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
900279	33	GTA ...	VHH ...	Ribo-seq	GTA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
279266	51	TTG ...	LST ...	Ribo-seq	TTG	moderate	21	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
99322	54	GTG ...	VIS ...	Ribo-seq	GTG	weak	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
1817807	255	CTG ...	LSV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
405716	48	TCA ...	SSM ...	Ribo-seq	TCA	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat

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