Metam
ORF

Logo

Gene

Gene

ID CARD

ID

HGNC:3151

Aliases

ECHS1
ENSG00000127884, HGNC:3151, NCBI:1892
OFF:ECHS1, SCEH

Chromosome

10

Transcripts

46 ORFs
1 known transcript
46 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

608 ENST00000368547 ECHS1-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

279268 60

GTG ...

VLT ...

Ribo-seq
GTG

weak

23 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
RPE-1, U2OS
610 33

CTG ...

LSR ...

Ribo-seq
CTG

19 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
LCL, loayza_puch_2016, MDA-MB-231,
RPE-1, THP-1, U2OS
1004 216

ATG ...

MTS ...

Ribo-seq
ATG

21 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, THP-1
99320 42

ATG ...

MPV ...

Ribo-seq
ATG

weak

20 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain_tumor,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, THP-1
1817801 30

GTG ...

VVV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Human
    Downstream
    sORF
HeLa
1817803 180

CTG ...

LRG ...

Ribo-seq
CTG

weak

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
612 66

CTG ...

LRP ...

Ribo-seq
CTG

18 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
HEK293, HEK293T, HeLa,
hES, LCL, loayza_puch_2016,
MDA-MB-231, RPE-1, THP-1,
U2OS
99316 30

GTG ...

VCR ...

Ribo-seq
GTG

weak

16 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, MDA-MB-231, RPE-1,
THP-1
992 129

CTG ...

LVT ...

Ribo-seq
CTG

23 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1
1006 225

GTG ...

VPA ...

Ribo-seq
GTG

20 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, THP-1
1817795 117

CTG ...

LTG ...

Ribo-seq
CTG

moderate

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1002 201

CTG ...

LQV ...

Ribo-seq
CTG

25 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
RPE-1, THP-1
632113 66

TTG ...

LRH ...

Ribo-seq
TTG

weak

13 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, hES, MDA-MB-231,
RPE-1, THP-1
632118 36

GTG ...

VRR ...

Ribo-seq
GTG

weak

15 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, MDA-MB-231,
RPE-1, THP-1
99318 87

TTG ...

LSA ...

Ribo-seq
TTG

moderate

17 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
THP-1
1817809 279

CTG ...

LLG ...

Ribo-seq
CTG

weak

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
632115 69

CTG ...

LLR ...

Ribo-seq
CTG

moderate

13 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, hES, MDA-MB-231,
RPE-1, THP-1
900268 33

GTC ...

VAG ...

Ribo-seq
GTC

strong

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
99615 39

TTG ...

LQL ...

Ribo-seq
TTG

17 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1
998 168

GTG ...

VLL ...

Ribo-seq
GTG

23 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1
994 162

TTG ...

LGS ...

Ribo-seq
TTG

23 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1
607 33

CTG ...

LEL ...

Ribo-seq
CTG

moderate

18 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1
1817799 150

ATG ...

MTA ...

Ribo-seq
ATG

moderate

2 sORFs_org_Human
Johnstone2016
    Alternative
    Downstream
    sORF
Brain_tumor, HEK293, HeLa,
HFF
900277 51

CCA ...

PTE ...

Ribo-seq
CCA

moderate

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
990 126

GTG ...

VTG ...

Ribo-seq
GTG

22 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1
99604 270

ATG ...

MEA ...

Ribo-seq
ATG

5 sORFs_org_Human
    CDS
    sORF
guo_2014, HEK293
900273 42

TCA ...

SRS ...

Ribo-seq
TCA

3 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HeLa, Jurkat, THP-1
3199693 84

CCT ...

PAC ...

Ribo-seq
CCT

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293
996 165

CTG ...

LLG ...

Ribo-seq
CTG

24 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
Jurkat, LCL, MDA-MB-231,
RPE-1, THP-1
900270 60

CCA ...

PET ...

Ribo-seq
CCA

moderate

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
632124 33

GTG ...

VSC ...

Ribo-seq
GTG

weak

12 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
HEK293, HEK293T, hES,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1
632110 36

GTG ...

VQK ...

Ribo-seq
GTG

moderate

12 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HeLa, hES,
MDA-MB-231, RPE-1, THP-1
1817791 84

CTG ...

LRS ...

Ribo-seq
CTG

weak

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1817797 126

GTG ...

VRV ...

Ribo-seq
GTG

weak

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
900275 63

ACT ...

TGT ...

Ribo-seq
ACT

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
1817805 183

TTG ...

LLR ...

Ribo-seq
TTG

weak

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
3304573 873

ATG ...

MAA ...

Ribo-seq
ATG

1 Johnstone2016
    CDS
Brain_tumor, HEK293, HeLa,
HFF
1817793 87

CTG ...

LLR ...

Ribo-seq
CTG

moderate

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1000 195

GTG ...

VRA ...

Ribo-seq
GTG

24 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
RPE-1, THP-1
900850 66

TCA ...

SRS ...

Ribo-seq
TCA

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
900852 87

ACT ...

TGT ...

Ribo-seq
ACT

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
900279 33

GTA ...

VHH ...

Ribo-seq
GTA

weak

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
279266 51

TTG ...

LST ...

Ribo-seq
TTG

moderate

21 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
RPE-1, U2OS
99322 54

GTG ...

VIS ...

Ribo-seq
GTG

weak

20 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, THP-1
1817807 255

CTG ...

LSV ...

Ribo-seq
CTG

moderate

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
405716 48

TCA ...

SSM ...

Ribo-seq
TCA

moderate

2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, Jurkat
3304574 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

3304573 873

ATG ...

MAA ...

Ribo-seq
ATG

1 Erhard2018

HFF
1817799 150

ATG ...

MTA ...

Predicted
ATG

1 Samandi2017
    sORF

ORFs

46 ORFs
1 known transcript
46 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

279268 60

GTG...

VLT...

GTG InCDS
Overlapping
sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
RPE-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
weak 23 sORFs_org_Human
610 33

CTG...

LSR...

CTG InCDS
Overlapping
sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
LCL, loayza_puch_2016, MDA-MB-231,
RPE-1, THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
19 sORFs_org_Human
1004 216

ATG...

MTS...

ATG InCDS
Overlapping
sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
21 sORFs_org_Human
99320 42

ATG...

MPV...

ATG Alternative
InCDS
Overlapping
sORF
BJ, Blood, Brain_tumor,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
weak 20 sORFs_org_Human
Johnstone2016
1817801 30

GTG...

VVV...

GTG Downstream
sORF
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Human
1817803 180

CTG...

LRG...

CTG Alternative
Downstream
sORF
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Human
612 66

CTG...

LRP...

CTG InCDS
Overlapping
sORF
BJ, Blood, Brain,
HEK293, HEK293T, HeLa,
hES, LCL, loayza_puch_2016,
MDA-MB-231, RPE-1, THP-1,
U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
18 sORFs_org_Human
99316 30

GTG...

VCR...

GTG Alternative
InCDS
Overlapping
sORF
Blood, Brain, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, MDA-MB-231, RPE-1,
THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
weak 16 sORFs_org_Human
992 129

CTG...

LVT...

CTG InCDS
Overlapping
sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
23 sORFs_org_Human
1006 225

GTG...

VPA...

GTG InCDS
Overlapping
sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
20 sORFs_org_Human
1817795 117

CTG...

LTG...

CTG Alternative
Downstream
sORF
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Human
1002 201

CTG...

LQV...

CTG InCDS
Overlapping
sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
RPE-1, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
25 sORFs_org_Human
632113 66

TTG...

LRH...

TTG InCDS
Overlapping
sORF
Blood, HAP1, HEK293,
HeLa, hES, MDA-MB-231,
RPE-1, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
weak 13 sORFs_org_Human
632118 36

GTG...

VRR...

GTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, HEK293,
HeLa, hES, MDA-MB-231,
RPE-1, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
weak 15 sORFs_org_Human
3304573 873

ATG...

MAA...

ATG
CDS
HFF, Brain_tumor, HEK293,
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3304574 UNKNOWN_TRANSCRIPT Ribo-seq
1 Erhard2018
608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
1 Johnstone2016
99318 87

TTG...

LSA...

TTG InCDS
Overlapping
sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
moderate 17 sORFs_org_Human
1817809 279

CTG...

LLG...

CTG Alternative
Downstream
sORF
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Human
632115 69

CTG...

LLR...

CTG InCDS
Overlapping
sORF
Blood, HAP1, HEK293,
HeLa, hES, MDA-MB-231,
RPE-1, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
moderate 13 sORFs_org_Human
900268 33

GTC...

VAG...

GTC InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
strong 1 sORFs_org_Human
99615 39

TTG...

LQL...

TTG InCDS
Overlapping
sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
17 sORFs_org_Human
998 168

GTG...

VLL...

GTG InCDS
Overlapping
sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
23 sORFs_org_Human
994 162

TTG...

LGS...

TTG InCDS
Overlapping
sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
23 sORFs_org_Human
607 33

CTG...

LEL...

CTG InCDS
Overlapping
sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
moderate 18 sORFs_org_Human
1817799 150

ATG...

MTA...

ATG Alternative
Downstream
sORF
Brain_tumor, HEK293, HeLa,
HFF,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Human
Johnstone2016
3304574 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
900277 51

CCA...

PTE...

CCA Alternative
InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Human
990 126

GTG...

VTG...

GTG InCDS
Overlapping
sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
22 sORFs_org_Human
99604 270

ATG...

MEA...

ATG CDS
sORF
guo_2014, HEK293
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
5 sORFs_org_Human
900273 42

TCA...

SRS...

TCA InCDS
Overlapping
sORF
HeLa, Jurkat, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
3 sORFs_org_Human
3199693 84

CCT...

PAC...

CCT InCDS
Overlapping
sORF
HEK293
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
1 sORFs_org_Human
996 165

CTG...

LLG...

CTG InCDS
Overlapping
sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
Jurkat, LCL, MDA-MB-231,
RPE-1, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
24 sORFs_org_Human
900270 60

CCA...

PET...

CCA InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Human
632124 33

GTG...

VSC...

GTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, Brain,
HEK293, HEK293T, hES,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
weak 12 sORFs_org_Human
632110 36

GTG...

VQK...

GTG InCDS
Overlapping
sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HeLa, hES,
MDA-MB-231, RPE-1, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
moderate 12 sORFs_org_Human
1817791 84

CTG...

LRS...

CTG Alternative
Downstream
sORF
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Human
1817797 126

GTG...

VRV...

GTG Alternative
Downstream
sORF
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Human
900275 63

ACT...

TGT...

ACT InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
1 sORFs_org_Human
1817805 183

TTG...

LLR...

TTG Alternative
Downstream
sORF
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Human
1817793 87

CTG...

LLR...

CTG Alternative
Downstream
sORF
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Human
1000 195

GTG...

VRA...

GTG InCDS
Overlapping
sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
RPE-1, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
24 sORFs_org_Human
900850 66

TCA...

SRS...

TCA Alternative
InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
1 sORFs_org_Human
900852 87

ACT...

TGT...

ACT Alternative
InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
1 sORFs_org_Human
900279 33

GTA...

VHH...

GTA Alternative
InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Human
279266 51

TTG...

LST...

TTG InCDS
Overlapping
sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
RPE-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
moderate 21 sORFs_org_Human
99322 54

GTG...

VIS...

GTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
weak 20 sORFs_org_Human
1817807 255

CTG...

LSV...

CTG Alternative
Downstream
sORF
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Human
405716 48

TCA...

SSM...

TCA Alternative
InCDS
Overlapping
sORF
HCT116, Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

608 ENST00000368547 ECHS1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Human

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unitary_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS