Transcript 460 | MetamORF

Transcript

ID CARD

MetamORF ID

460

ENST00000465189

Name

NSMCE4A-205

Strand

Biotype

processed_transcript

Start-end positions

121967693-121975122

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:25935

Aliases

bA500G22.3,
C10orf86, ENSG00000107672, FLJ20003,
HGNC:25935, NCBI:54780, NSE4A,
NSMCE4A, OFF:NSMCE4A

Chr 10

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
899736	108	CGG ...	RGR ...	Ribo-seq	CGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1817571	33	GTG ...	VMK ...	Ribo-seq	GTG	weak	5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, MM1S, RPE-1
1134722	114	TTG ...	LNS ...	Ribo-seq	TTG		5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, MDA-MB-231
899719	90	GAG ...	EQE ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
899739	126	CAC ...	HRA ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
899728	180	CCG ...	PTK ...	Ribo-seq	CCG		1	sORFs_org_Human	ncRNA sORF	Jurkat
899715	198	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	Jurkat
405585	90	GGT ...	GDK ...	Ribo-seq	GGT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
899724	39	CCA ...	PSV ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1093248	78	CTG ...	LRG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	ncRNA sORF	HEK293, hES, MM1S
899722	183	CTC ...	LIN ...	Ribo-seq	CTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
405583	123	GAA ...	EEL ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	HCT116
1984004	69	ATG ...	MPT ...	Ribo-seq	ATG		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, MDA-MB-231
405587	114	GGA ...	GFR ...	Ribo-seq	GGA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
1817569	30	ATG ...	MKI ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	ncRNA sORF	HeLa, MM1S, RPE-1
459	48	CTG ...	LKN ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, RPE-1
1134724	54	GTG ...	VPP ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	HEK293, hES, MDA-MB-231
1134720	57	TTG ...	LFS ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
899732	189	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
899734	264	GAC ...	DEM ...	Ribo-seq	GAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
899717	57	TTC ...	FRF ...	Ribo-seq	TTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
899730	231	GAG ...	EAD ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
98984	99	CTG ...	LNA ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
278849	57	TTG ...	LFW ...	Ribo-seq	TTG		8	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
899726	207	CAG ...	QIR ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat

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