Transcript 3995 | MetamORF

Transcript

ID CARD

MetamORF ID

3995

ENST00000545930

Name

DDB1-225

Strand

Biotype

processed_transcript

Start-end positions

61314453-61327551

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

HGNC:2717

Aliases

DDB1,
ENSG00000167986, HGNC:2717, NCBI:1642,
OFF:DDB1

Chr 11

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4065	90	GTG ...	VSL ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HeLa
8362	207	GTG ...	VSL ...	Ribo-seq	GTG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HeLa, hES, HFF, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3994	36	GTG ...	VAT ...	Ribo-seq	GTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
409562	240	CGT ...	RET ...	Ribo-seq	CGT		1	sORFs_org_Human	ncRNA sORF	HCT116
916268	297	GCC ...	ASI ...	Ribo-seq	GCC		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
102137	30	GTG ...	VLS ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	BJ, HEK293
483639	219	GTG ...	VLS ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	Brain, guo_2014, HEK293, HEK293T, loayza_puch_2016
105174	258	CTG ...	LRS ...	Ribo-seq	CTG		13	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016
3997	45	CTG ...	LWQ ...	Ribo-seq	CTG		14	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, THP-1
907815	33	GGT ...	GLS ...	Ribo-seq	GGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
294205	171	ATG ...	MLS ...	Ribo-seq	ATG		11	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
916270	156	GTC ...	VEA ...	Ribo-seq	GTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
3999	57	ATG ...	MIS ...	Ribo-seq	ATG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
102133	210	GTG ...	VRL ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
4001	102	GTG ...	VDD ...	Ribo-seq	GTG		13	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, hES, HFF
916272	162	GAA ...	ENV ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
105172	222	TTG ...	LVL ...	Ribo-seq	TTG		7	sORFs_org_Human	ncRNA sORF	Brain, guo_2014, HEK293, HEK293T, loayza_puch_2016
917262	33	CCT ...	PGY ...	Ribo-seq	CCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
102139	33	TTG ...	LVL ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	BJ, HEK293
907818	51	TTC ...	FSI ...	Ribo-seq	TTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
4003	114	CTG ...	LMG ...	Ribo-seq	CTG		18	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, THP-1

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